PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39174.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HB-other
Protein Properties Length: 345aa    MW: 38409.5 Da    PI: 8.1322
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39174.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.82.4e-0519741255
                HHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
    Homeobox 12 leeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                ++e+e+  ++  ++ p++   e LA+k            ++ +q+ +WFqNrR+  
  KFK39174.1 19 VTEMEAILQQhnTSMPNRMVLEALADKFsdtverkgkiVVQFKQIWNWFQNRRYAL 74
                5566666664447778888888888888888888887788999**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.007781IPR001356Homeobox domain
SuperFamilySSF466891.2E-91278IPR009057Homeodomain-like
PROSITE profilePS500718.5351377IPR001356Homeobox domain
CDDcd000860.002531375No hitNo description
Gene3DG3DSA:1.10.10.606.4E-61477IPR009057Homeodomain-like
PfamPF167195.4E-41140268IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFNLPEVT EMEAILQQHN TSMPNRMVLE ALADKFSDTV ERKGKIVVQF  60
KQIWNWFQNR RYALRARGNK GPGKLNVSSM PRGVDPTNQM RNVVQPLAAP KTIHMTGNLP  120
AMMPATSVPG VMRSGSDNSY LEFEAKSARD GAWYDVEAFL AHRNLDTGDP EVQVRFLGFE  180
VEEDEWINVK KHVRQRSLPC EASECVAVLA GDLVLCFQEG KDQALYYDAI VLDAQRRRHD  240
VRGCRCRFLV RYSHDQAEQE IVPLRKICRR PETDYRLQQL HSGANDLANS NQFQKPALDV  300
AVKNPTSQSG ATVPDVAPEQ KDPSLIATSV QPSSSAAPVL PAGTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A9e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B9e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A9e-451412724134SHH1 SAWADEE
4iur_B9e-451412724134SHH1 SAWADEE
4iut_A9e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B9e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A9e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B9e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A9e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B9e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888724.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A087HAM20.0A0A087HAM2_ARAAL; Uncharacterized protein
STRINGA0A087HAM20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.30.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding