PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK39173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 344aa MW: 38281.4 Da PI: 8.1322 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.8 | 2.4e-05 | 19 | 74 | 12 | 55 |
HHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 12 leeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 ++e+e+ ++ ++ p++ e LA+k ++ +q+ +WFqNrR+ KFK39173.1 19 VTEMEAILQQhnTSMPNRMVLEALADKFsdtverkgkiVVQFKQIWNWFQNRRYAL 74 5566666664447778888888888888888888887788999**********965 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.007 | 7 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.18E-9 | 12 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.535 | 13 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.0024 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-6 | 14 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 3.5E-41 | 140 | 267 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MGRPPSNGGP AFRFNLPEVT EMEAILQQHN TSMPNRMVLE ALADKFSDTV ERKGKIVVQF 60 KQIWNWFQNR RYALRARGNK GPGKLNVSSM PRGVDPTNQM RNVVQPLAAP KTIHMTGNLP 120 AMMPATSVPG VMRSGSDNSY LEFEAKSARD GAWYDVEAFL AHRNLDTGDP EVQVRFLGFE 180 VEEDEWINVK KHVRQRSLPC EASECVAVLA GDLVLCFQEG KDQALYYDAI VLDAQRRRHD 240 VRGCRCRFLV RYSHDQAEEI VPLRKICRRP ETDYRLQQLH SGANDLANSN QFQKPALDVA 300 VKNPTSQSGA TVPDVAPEQK DPSLIATSVQ PSSSAAPVLP AGTA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 2e-46 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-46 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-46 | 141 | 271 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 2e-46 | 141 | 271 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 2e-46 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-46 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-46 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-46 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-46 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-46 | 141 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK39173.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY093042 | 0.0 | AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. | |||
GenBank | BT003428 | 0.0 | BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888724.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3 | ||||
Swissprot | Q8RWJ7 | 0.0 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A087HAM1 | 0.0 | A0A087HAM1_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HAM2 | 0.0 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18380.3 | 0.0 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |