PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39135.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 860aa    MW: 97174.5 Da    PI: 6.2574
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39135.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-13501543548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      T+eEd++l  av ++G ++W ++a  +  gRt+kqc +rw++ l
       KFK39135.1 501 TAEEDDQLCAAVDLFGENDWQSVATLLE-GRTGKQCSERWRNTL 543
                      67**************************.************975 PP
2Myb_DNA-binding51.13e-16551594246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      gr++ eEd++l+ av+++G ++W++Ia+ ++ gRt  qc++rw +
       KFK39135.1 551 GRFSSEEDKRLKVAVTLFGAKNWHKIAQFVP-GRTQVQCRERWAN 594
                      89*****************************.***********77 PP
3Myb_DNA-binding47.73.7e-15602654147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 
                      rg+WT+eEde+l++a+k++G+  W+++a ++          Rt++qc  rw+++
       KFK39135.1 602 RGKWTKEEDEKLKEAIKEHGNS-WAKVATHLSshmsshmSCRTDNQCSRRWYSL 654
                      89******************99.****************99**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.506344437IPR017877Myb-like domain
SMARTSM007178348439IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-7351367IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-7413449IPR009057Homeodomain-like
SuperFamilySSF466893.91E-13421496IPR009057Homeodomain-like
PROSITE profilePS500908.153438490IPR017877Myb-like domain
SMARTSM007171.1E-6442492IPR001005SANT/Myb domain
PfamPF002496.3E-6444488IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-10450500IPR009057Homeodomain-like
PROSITE profilePS5129420.991491547IPR017930Myb domain
SMARTSM007174.0E-11495545IPR001005SANT/Myb domain
CDDcd001672.36E-10498543No hitNo description
PfamPF002493.4E-11501542IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-15501545IPR009057Homeodomain-like
SuperFamilySSF466891.03E-19523592IPR009057Homeodomain-like
PROSITE profilePS5129414.007548596IPR017930Myb domain
SMARTSM007171.8E-13549598IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-21551600IPR009057Homeodomain-like
PfamPF002499.5E-14551594IPR001005SANT/Myb domain
CDDcd001677.86E-11552596No hitNo description
SuperFamilySSF466891.1E-23576658IPR009057Homeodomain-like
PROSITE profilePS5129424.124597659IPR017930Myb domain
SMARTSM007172.1E-13601657IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-19601654IPR009057Homeodomain-like
PfamPF002495.3E-14602654IPR001005SANT/Myb domain
CDDcd001671.74E-10604654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MNRESLYGAS DDDDDDEEDD IGDDLDDLRR ACTVTDEITA KPDSIGGGGG GIPSDSEKED  60
DFEMLRNIKT QLASSTNVSS GPPSDSESED DFEMLRIIKS QLALSMDNTC VASMGLSDDE  120
DEDDALETLR AIRRRFSAYK NFDAEGSFMN DSPRKKKQVL ASDNEPSSEI LSRSNTYESF  180
PDHGKSIVTV PESGELQAGH SDDVREKTAL EPLDQMETCQ SSLLPAAGSS FPESAQAFVD  240
AIRRNRSYQK FLRGKLSEIE ATIEKNEKHK KNVKIVKDFQ ASCKRITKQA LSQRKDPRVE  300
LISARKSGTP DSSEGNDIKT SPSTLGPLQN SCVAHYKMAL EKYPVSVDRR NWSTEENENL  360
AKGLKQQVQE TFLFEAIDRS SGSEGPAGDI NSILESIKKL EITPEMIRQF LPKVNWDQLA  420
LKDRSAAECE ARWMSSEDPL INHGDWTAAE EKTLLLIIQK KSFTDWLDIA VSLGTNRTPF  480
QCLARYQRSL NRDILRREWT TAEEDDQLCA AVDLFGENDW QSVATLLEGR TGKQCSERWR  540
NTLHPTRKKV GRFSSEEDKR LKVAVTLFGA KNWHKIAQFV PGRTQVQCRE RWANSLDPRI  600
NRGKWTKEED EKLKEAIKEH GNSWAKVATH LSSHMSSHMS CRTDNQCSRR WYSLYPHLVP  660
LKQKANRLRR EAMVCNFVDR EAERPALAAD DFLALPEISI EPEPEVVAEK KKRKARQKKS  720
DAECESEASC VATKRQSKRR RKGLDQGESE APCVATKRQS KRRRKGLDQC SRDVCRLEDE  780
TVCETDSNNG GEVELLEWHS EIQDNVKERQ RRPRRKSVAK TLDNSSVITN CSQVKTGNKK  840
LKPRRKVSAV VPSENQDAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-264466608159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-264466608159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1811815RPRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015329.10.0snRNA-activating protein complex subunit 4 isoform X4
TrEMBLA0A087HAI30.0A0A087HAI3_ARAAL; Myb domain protein 4r1
STRINGA0A087HAI30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1