PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39124.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WOX
Protein Properties Length: 341aa    MW: 39194.7 Da    PI: 7.9959
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39124.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-2174133357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 +R+++t++ql++Leel+++ +r+psa+++++++ +l    +++ ++V++WFqN++a+e++
  KFK39124.1  74 SRWNPTPDQLRALEELYRQgTRTPSADHIQQITGQLrrygKIEGKNVFYWFQNHKARERQ 133
                 7*****************99**************************************97 PP
2Wus_type_Homeobox113.79.3e-3773135365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Ptp+Q++ Leely++G+rtP++++iq+it +L++yGkie+kNVfyWFQN+kaRerqk+
         KFK39124.1  73 SSRWNPTPDQLRALEELYRQGTRTPSADHIQQITGQLRRYGKIEGKNVFYWFQNHKARERQKR 135
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.0E-471138IPR001356Homeobox domain
SuperFamilySSF466891.86E-1174139IPR009057Homeodomain-like
PfamPF000464.4E-1974133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-974133IPR009057Homeodomain-like
CDDcd000861.09E-475135No hitNo description
PROSITE profilePS5007110.70679134IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MWMMGYNEGA TDSFNGGRKL RPLIPRLSSC PTTAANTNSD HRFNMVVTMT AEQNKRELMM  60
LNSEPQHPPV MVSSRWNPTP DQLRALEELY RQGTRTPSAD HIQQITGQLR RYGKIEGKNV  120
FYWFQNHKAR ERQKRRRQME SGHEESVITT TTTLVSNHEF DKKYPPGYKV EQTKNWICSV  180
GCDIQPEKPQ DHHHQEEPVN RRVERNGRCG GEEIRRSFTG RNSTWQMMQL PPGLYHHNLV  240
LSSTSVSSNT STSNSSVSAA KDTITVSPLF LSTRASKNIR TCDGDKDQEQ HEEDCSNCES  300
NQQEHTLELF PLRKEGFCSN GEKEKESSGI HCFYEFLPLK N
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872942.10.0WUSCHEL-related homeobox 1 isoform X2
SwissprotQ6X7K00.0WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A087HAH20.0A0A087HAH2_ARAAL; Uncharacterized protein
STRINGA0A087HAH20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.10.0WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]