PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK39102.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 244aa MW: 28110.2 Da PI: 4.7404

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK39102.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.1	2.4e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat+ gyWk+tgkd++v+s ++ KFK39102.1 6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWDLSeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTS-QS 102 79**************************.99**********84335556888**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLv+y+grap+g +tdWvmheyrl KFK39102.1 103 RAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 9**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-65	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.809	6	156	IPR003441	NAC domain
Pfam	PF02365	2.2E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE VDLYKCEPWD LSEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRGGYWK STGKDRRVTS QSRAIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKDCED PSSLQDSYAL CRVFKKNGIC SELETEQQLQ TGQCSFTTAS 180 IEINSNNHFN NNNIEYETMS PEVGVSSGCV EDVVDDKDDS WMQFITDDAW DTSSTAMGHG 240 QGVY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-56	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK39102.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056595	0.0	DQ056595.1 Arabidopsis thaliana no apical meristem family protein (At3g17730) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406699.1	1e-172	NAC domain-containing protein 86
Swissprot	Q9FFI5	5e-92	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A087HAF0	0.0	A0A087HAF0_ARAAL; Uncharacterized protein
STRING	A0A087HAF0	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8504	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-157	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]