PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39039.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 345aa    MW: 40337.1 Da    PI: 10.4998
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39039.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-1619112198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f k++ ++d +++++  +p + ++++ ++     +++++ ++g sWev++  +k+++ y+++  GW++Fv++n L  ++fv+F+++++++f  +v +++
  KFK39039.1  19 FYKIFQSADLSSESMRAFPYNIVKSIPEE-DFCYKMVIKAQWGSSWEVEV--SKNPRFYYMEkLGWNQFVSDNALGGNEFVTFTHKRKMCF--HVNIYE 112
                 66888889999999999******999544.47789***************..******666627********************9999***..888876 PP
2B338.22.6e-122563311290
                 HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  ++ l +pk+f+e+h     esk++++ +++g  sW+  +    ++ r+++++GW++ +++  L  gD v+Fkl++ +ef
  KFK39039.1 256 YLKFLAIPKDFVEDHIRH--ESKMVMVHHPDGkGSWKALC--LVRKLRTIFSRGWSKLAREYPLLIGDRVTFKLVEPTEF 331
                 446699*********534..6889********78******..77778899***********************9876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1613115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1714118IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-1318111No hitNo description
SMARTSM010195.4E-1719114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.50519114IPR003340B3 DNA binding domain
PfamPF023621.1E-1419112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14242333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-17243334IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.997245339IPR003340B3 DNA binding domain
CDDcd100179.41E-11246329No hitNo description
SMARTSM010195.5E-15248338IPR003340B3 DNA binding domain
PfamPF023621.4E-9253331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRKSGFDRT KEERKKLSFY KIFQSADLSS ESMRAFPYNI VKSIPEEDFC YKMVIKAQWG  60
SSWEVEVSKN PRFYYMEKLG WNQFVSDNAL GGNEFVTFTH KRKMCFHVNI YEQNGKEIVN  120
PRKPVTMASA SRSRKEQTES IYKDVKKEEE SCESMEEIDL GVPKKKAEEY KTSKKIKSKK  180
VVTDVEEVEL KMRKKMKSKK VVNGVEIGES SRGVERIMRK KKAEKSKTSK KKRKQKRKSK  240
VENGIPEFTI TIKKSYLKFL AIPKDFVEDH IRHESKMVMV HHPDGKGSWK ALCLVRKLRT  300
IFSRGWSKLA REYPLLIGDR VTFKLVEPTE FILVKSKKAK EEITP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218234RKKKAEKSKTSKKKRKQ
2219233KKKAEKSKTSKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406779.11e-146B3 domain-containing protein At3g17010
SwissprotQ9LSP61e-111Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A087HA870.0A0A087HA87_ARAAL; Uncharacterized protein
STRINGA0A087HA870.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.13e-60B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]