PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39035.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CAMTA
Protein Properties Length: 859aa    MW: 97578.1 Da    PI: 7.207
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39035.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.62.9e-50291462118
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 l+e k rwl+++ei+a+L+n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg+ e +++yYah+e+n+tf rrcy
  KFK39035.1  29 LEEaKGRWLRPNEIHAVLANPQYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDNTTFVRRCY 127
                 455599********************************************************************************************* PP

        CG-1 100 wlLeeelekivlvhylevk 118
                 wlL++++e+ivlvhy++++
  KFK39035.1 128 WLLDKARENIVLVHYRDTQ 146
                 ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.81425151IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-7928146IPR005559CG-1 DNA-binding domain
PfamPF038595.1E-4431144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.93E-15316402IPR014756Immunoglobulin E-set
PfamPF018334.6E-4317395IPR002909IPT domain
PfamPF127968.9E-8505582IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-18510622IPR020683Ankyrin repeat-containing domain
CDDcd002043.11E-16510612No hitNo description
Gene3DG3DSA:1.25.40.201.1E-18511616IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.502520624IPR020683Ankyrin repeat-containing domain
SMARTSM002482.0E-6553582IPR002110Ankyrin repeat
PROSITE profilePS5008811.915553585IPR002110Ankyrin repeat
PROSITE profilePS500967.327702726IPR000048IQ motif, EF-hand binding site
SMARTSM0001581717739IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0057740762IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.981741765IPR000048IQ motif, EF-hand binding site
PfamPF006120.0039743762IPR000048IQ motif, EF-hand binding site
SMARTSM0001528818840IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.151819848IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MDSDGSGRLI GSEIHGFHTL QDLDVKTMLE EAKGRWLRPN EIHAVLANPQ YFTINVKPVN  60
LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGNEERIH VYYAHGEDNT  120
TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSNSPIS VSDNSSPNLV TVEDIDFSVD  180
NSHYLASNSN PVVRNHEVRI HDINTLDWDE LLVQTDLNNQ SAPILDDMSY FTEQLHSAPN  240
GSAEHVNVTD ESLDALLNNG PQSRESFGRW MNSFLSDSNG SLEDPSFEAM VTLEQDQLAP  300
QAAYHPHSNA PELVFNITEV SPAWAYSSEK TKILVAGLLH DSYQHLGSSN LFCVCGDSCV  360
PAEYVQPGVY RCFIPPHSPG MVNLYLSVDG HKPISKCFSF EHRSVPVLDK TVPECDHESK  420
WEEFELQVRL AHLLFTSSNK LNVLSSKISP ENLQDAKKLA NKTSHLLNSW AYLIKSIQGN  480
KVSFDEAKDH IFELTLKNRI KEWLMEKVLE GRNTRDYDSK GLGVLHLCAI LGYTWSIQLF  540
SLSGLSLNFR DKQGWTALHW AAYYGREKMV AALLSAGAKP NLVTDSRKDN LGGCTAADLA  600
QQNGFDGLAA YLAEKGLVAQ FIDMKIAGNI SGSLEGCKAE KSNRGALPED EQNLKDALAA  660
YRTAAEAAAR IQGAFREKAL KAAQSSVIQF ANKEEETKSI MAAMKIQNAF RKYETRRKIE  720
AAYRIQCRFQ TWKMRREYLN MRRQTIRIQA AFRGFQARRQ YKKIIWSVGV LEKAIIRWRL  780
KRKGFRGLQV SQGEAEEDPQ GEAEEDFYKT SQRQAEERLE RSVVRVQAMF RSKKAQDDYR  840
RMKLSHEEAQ LEYDCLQDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39035.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100270.0AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406788.10.0calmodulin-binding transcription activator 6
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLA0A087HA830.0A0A087HA83_ARAAL; Uncharacterized protein
STRINGA0A087HA830.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]