PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK38991.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 392aa MW: 41683.1 Da PI: 8.4927 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.1 | 2e-13 | 138 | 182 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky KFK38991.1 138 PWTEEEHRLFLVGLQKLGKGDWRGISRSYVTSRTPTQVASHAQKY 182 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.116 | 131 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-16 | 133 | 187 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-17 | 134 | 185 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.5E-10 | 135 | 185 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 137 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.3E-11 | 138 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.82E-9 | 138 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MTRRCSHCSN NGHNSRTCPT RGGGGGGTCG GSGGGGGGGG GGSFSSSTVK LFGVRLTDGS 60 IIKKSASMGN LSALAVAAAA AHHRLSPSSP LATSNLNDSP LSDHARYSSQ HNDGYLSDDP 120 AHGSGSIHRR GERKRGVPWT EEEHRLFLVG LQKLGKGDWR GISRSYVTSR TPTQVASHAQ 180 KYFIRHTSSS RRKRRSSLFD MVTDEMVTDS SPTQEDQTLN RSSPSKEPES KNYLPSLELS 240 LNNTTESEAV VATAPPQEKP EEAVEPSNEL SPMLVPGGFY PPCFPVTYTF WPPATSTSLH 300 GTEHSLEAES FTQQHQVLKP TPGFAKERVN MDELVGMSQL SIGMAARHET GTSPSPLSLK 360 LIGEPSRPSA FHSNGSVNGS DLSKGNNAIQ AI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 42 | SGGGGGGGGGGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK38991.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297882.1 | 0.0 | transcription factor MYBS3 | ||||
TrEMBL | A0A087HA39 | 0.0 | A0A087HA39_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HA39 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9313 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16350.1 | 0.0 | MYB_related family protein |