PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK38966.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | CPP | ||||||||
Protein Properties | Length: 412aa MW: 46277.2 Da PI: 7.5712 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.8 | 1.2e-14 | 57 | 96 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+C++skClk+YC+Cfa+g++C + C C dC+N+++ KFK38966.1 57 KKQKGCRCRQSKCLKLYCDCFASGEFCID-CDCADCHNNSD 96 589**************************.********987 PP | |||||||
2 | TCR | 49.3 | 9.6e-16 | 142 | 181 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++gC+Ck++kClkkYCeCf+a++ Cs++CkC +C+N ++ KFK38966.1 142 SSRGCKCKRTKCLKKYCECFQANALCSDNCKCINCENVSQ 181 579**********************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.8E-16 | 57 | 97 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 27.504 | 58 | 181 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.3E-11 | 59 | 94 | IPR005172 | CRC domain |
SMART | SM01114 | 2.0E-15 | 141 | 182 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.2E-12 | 144 | 178 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MIDMIGHIES GAIAAEKNHR ELVFTKLELS SESPIKELAL FPPISREPTD QKGITWKKQK 60 GCRCRQSKCL KLYCDCFASG EFCIDCDCAD CHNNSDNCDI REAALANVLD RYPNTFNGES 120 TNSVIDKQYE AAPVTKLGLR SSSRGCKCKR TKCLKKYCEC FQANALCSDN CKCINCENVS 180 QRFQPSVFAW GLNKTKPENN YNVNAQGIIS TNRDNVSFSS HHGAGFMNNA SGFASHSYLQ 240 RKKYRELPEQ RNSRSAPLSS IPENSVLKAL HSPMTSSPKL PYRKKRSRLG YTTRRLPDLG 300 DICSLLLAAS ESARANAELQ TGLKDQEGIC INPNDDKQDN ISIELSSESL SRNVEEEIQS 360 CGRLIELIDA QYNGVEDSQC KETDIYMEQE RAVLETFRDY LQKLMEIGFR KG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-17 | 59 | 181 | 11 | 123 | Protein lin-54 homolog |
5fd3_B | 6e-17 | 59 | 181 | 11 | 123 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK38966.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015245.1 | 0.0 | protein tesmin/TSO1-like CXC 8 | ||||
Swissprot | Q700D0 | 1e-151 | TCX8_ARATH; Protein tesmin/TSO1-like CXC 8 | ||||
TrEMBL | A0A087HA14 | 0.0 | A0A087HA14_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HA14 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14844 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16160.1 | 1e-139 | Tesmin/TSO1-like CXC domain-containing protein |