PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38633.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 306aa    MW: 35340.6 Da    PI: 7.655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38633.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.4e-49271552128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                  pGfrFhPtdeelv +yL+kkv+ kk  +++e+i+++diyk++PwdLp + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s   ++
  KFK38633.1  27 LPGFRFHPTDEELVGFYLTKKVHLKKpSKIDEIISQIDIYKFDPWDLP-RSRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDgsSK 124
                 59*******************998875778888***************.5567789**************************************96666 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++glkktLv+y g+a kg+ktdW+mhe+rl
  KFK38633.1 125 AVIGLKKTLVYYLGSAGKGNKTDWMMHEFRL 155
                 77***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100550.34826190IPR003441NAC domain
SuperFamilySSF1019417.32E-5026190IPR003441NAC domain
PfamPF023651.0E-2428155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEEIMGPFDQ RRRESKAEEE EEQVLKLPGF RFHPTDEELV GFYLTKKVHL KKPSKIDEII  60
SQIDIYKFDP WDLPRSRNTE KESYFFCKRG RKYRNSIRPN RVTGSGFWKA TGIDKPVYSD  120
GSSKAVIGLK KTLVYYLGSA GKGNKTDWMM HEFRLPTAND TIPGGPTHLN PTPSCLLLAE  180
VWTLCRIFKR NVSSRKYTPE WRELASGKRV KSQQSNHQEA YINFGDNESS SSTNMINVLE  240
SKGNYERNVF QLHQHQPTIP MDTTTTQVDS SVPHFSNDNI DDINYENWDE LRSVVEFAFP  300
PSSDLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-432819619171NO APICAL MERISTEM PROTEIN
1ut4_B2e-432819619171NO APICAL MERISTEM PROTEIN
1ut7_A2e-432819619171NO APICAL MERISTEM PROTEIN
1ut7_B2e-432819619171NO APICAL MERISTEM PROTEIN
4dul_A2e-432819619171NAC domain-containing protein 19
4dul_B2e-432819619171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38633.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893358e-50AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673189.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-72NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A087H9310.0A0A087H931_ARAAL; Uncharacterized protein
STRINGA0A087H9310.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-177NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]