PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38626.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 318aa    MW: 36315.3 Da    PI: 5.3997
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38626.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+ eE e+l+  + ++G g+W++ ++  g++R++k+c++rw +yl
       KFK38626.1 16 RGQWSHEESEILKAFILKHGHGNWRSLPKLAGLRRCGKSCRLRWINYL 63
                     89********************************************97 PP
2Myb_DNA-binding51.13.1e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++ ++++++ +G++ W+ Ia++++ gRt++++k+ w++
       KFK38626.1  69 RGNFTKEEEDTIIQLHQAHGNK-WAQIASHFP-GRTDNEIKNVWNT 112
                      89********************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5631163IPR017930Myb domain
SMARTSM007178.6E-111565IPR001005SANT/Myb domain
SuperFamilySSF466891.83E-2915110IPR009057Homeodomain-like
PfamPF002493.4E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-211770IPR009057Homeodomain-like
CDDcd001671.48E-81963No hitNo description
PROSITE profilePS5129423.19964118IPR017930Myb domain
SMARTSM007179.9E-1468116IPR001005SANT/Myb domain
PfamPF002493.2E-1569112IPR001005SANT/Myb domain
CDDcd001671.66E-1071112No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2671119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRRKRTPCCV DGQVNRGQWS HEESEILKAF ILKHGHGNWR SLPKLAGLRR CGKSCRLRWI  60
NYLRPGLKRG NFTKEEEDTI IQLHQAHGNK WAQIASHFPG RTDNEIKNVW NTDLKKRLVN  120
NNSSPSSDVT NHQASSISAS SSSSATSLVS NDVINSEKQN QEEEFKEILV EDMPIGYKVT  180
APQSLGLLFE DLQIPRPPIS EPDSQTTQRE PNHDQVNAPQ SLEFLFEDLQ IPPRPISTPD  240
SQAIQRESDH DQVTAPEALE FPFEDLQIPL PSISVPDSQA IQRESDHDQL CSRMVEPELS  300
DFHEWNNYLE HQSFWNTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-211311824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269|PubMed:24278034}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00352DAPTransfer from AT3G12820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38626.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269|PubMed:15489280, ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195861e-109AY519586.1 Arabidopsis thaliana MYB transcription factor (At3g12820) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407290.11e-95transcription factor MYB10
SwissprotQ9LTV49e-90MYB10_ARATH; Transcription factor MYB10
TrEMBLA0A087H9240.0A0A087H924_ARAAL; Uncharacterized protein
STRINGA0A087H9240.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140961624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12820.12e-90myb domain protein 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]