PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38490.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 857aa    MW: 95813.4 Da    PI: 7.0605
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38490.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.8e-1514102197
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ffk l     + s+ l +p  f+++h     +e+s+ + l++  s   Wevk+  ++++    lt+GW++F+ +++L++gD++vF++dg+  f  +v++
  KFK38490.1  14 FFKPL--LPGFHSH-LNIPIAFFSKHleRTRNESSVVVNLRSdVSDGIWEVKM--DGQR----LTQGWQNFATSHDLRVGDVLVFRHDGDLWF--HVTA 101
                 66666..5566666.99*********98555668888999887888*******..9888....***********************9987776..7766 PP

                 E CS
          B3  97 f 97 
                 f
  KFK38490.1 102 F 102
                 6 PP
2B357.72.2e-18146235395
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  + +++++l++++l lp +f +++g++  ++ +++l +e+g+ W++ l   k  g++++++GWk+F+ an+ +++D+++Fkl++ +++++v++
  KFK38490.1 146 VARVTASNLSKDMLFLPMDFSRSNGLN--GQCEIILLNEDGKPWRLPLGCHKPNGWVYIKSGWKSFCCANRQRANDSLTFKLVQ-NGKTPVLQ 235
                 56689999****************999..5559***************87888889**************************99.55556766 PP
3B349.11e-15242330190
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                 f++ ++++++lks++++lp +f++++g+++++  ++tl d+ g + +  l+ + k gr+ l+kGW+eF++ ng+k+g+++ ++l+++ +++
  KFK38490.1 242 FLTLTLTPYNLKSSIMRLPASFVKANGIEHAR--KITLVDRYGGKRTTCLKPEEKYGRIRLGKGWREFCEVNGVKTGESFELELIKEeEDT 330
                 6778899*******************998766..7********8888888779999****************************9873443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-216107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-228112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.6611105IPR003340B3 DNA binding domain
CDDcd100171.12E-1512102No hitNo description
SMARTSM010194.6E-1914105IPR003340B3 DNA binding domain
PfamPF023625.7E-92398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-19138234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-21140236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.521144239IPR003340B3 DNA binding domain
SMARTSM010199.2E-22144240IPR003340B3 DNA binding domain
CDDcd100171.40E-15144237No hitNo description
PfamPF023629.7E-18146236IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-17239328IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15240328IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-14241327No hitNo description
SMARTSM010191.8E-19242340IPR003340B3 DNA binding domain
PfamPF023624.2E-14242332IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379242338IPR003340B3 DNA binding domain
PfamPF011031.4E-30522855IPR000184Bacterial surface antigen (D15)
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0019867Cellular Componentouter membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MENGSTSSPK TPHFFKPLLP GFHSHLNIPI AFFSKHLERT RNESSVVVNL RSDVSDGIWE  60
VKMDGQRLTQ GWQNFATSHD LRVGDVLVFR HDGDLWFHVT AFGPSCCEIQ YDDDDVIQIS  120
SDSDSEKDQY TREGEAGYSS DHSCFVARVT ASNLSKDMLF LPMDFSRSNG LNGQCEIILL  180
NEDGKPWRLP LGCHKPNGWV YIKSGWKSFC CANRQRANDS LTFKLVQNGK TPVLQLYTPY  240
RFLTLTLTPY NLKSSIMRLP ASFVKANGIE HARKITLVDR YGGKRTTCLK PEEKYGRIRL  300
GKGWREFCEV NGVKTGESFE LELIKEEEDT ATHLLKINAE PLFRQTPMRV HDVIVRGNDK  360
TKDNMIKAEV AALREATTLQ ELCDASEVAN SNLRALGILY SVCIDFDSGP PELPGTTNVV  420
IEVVECKSLP IINFNYDTSP KAEVAGVREA TTLKELREAS IVAQSNLRAL GIFDSVSIEI  480
YSELPSTTNV VFKVVESKTV IDFYRIPKVI LSGFDFSVKS KNIFGYGDIW DGSVNYGDDA  540
SEFSLGMYFP RILGLRNPFT PRLHLSNQDW RKFSSYKERF LGVSLDLLST EYHELVYTAG  600
WRSLIDPSHA ASKSIKRQLG HSMFSTLKYT FEVDERDSTL RPRSGYAFTS TSQIGGLAPN  660
SLSLRFLKQE FDLRYAVPFG FYHAALNFGV SGGVIFPWGS GYQNCPSSLP ERFFLGGDSS  720
FVDILGGPSA LWGFKNRGVG PNEPKSKGDD KRDFVGGDAA VTAFADLSFD LPVSWLRENG  780
IHGHVFGCAG NAAKLSENEF RNFSGLKFLE TCRTSVGAGI VWLTSLFRME FNYCHVLKKQ  840
EHDRAGSGFS VSISKPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187718.10.0Outer membrane OMP85 family protein
TrEMBLA0A087H8N80.0A0A087H8N8_ARAAL; Uncharacterized protein
STRINGA0A087H8N80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-81B3 family protein