PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK38489.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | B3 | ||||||||
Protein Properties | Length: 368aa MW: 41551.9 Da PI: 6.4365 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.9 | 1.2e-15 | 22 | 95 | 12 | 88 |
HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ l +p f++++ g +++s+ ++l++ s Wevk+ ++++ lt+GW++Fv +++L++gD++vF++dg+ KFK38489.1 22 FHCHLNIPIAFFSKYlaGTTNKGSVVVKLRSdASDVIWEVKM--DGQR----LTQGWQKFVTSHDLRVGDILVFRHDGDL 95 5678************9777779999999997888*******..9888....***********************88753 PP | |||||||
2 | B3 | 53 | 6.1e-17 | 162 | 257 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+ + +++++l++++l lp +f +++g+ +++ +++l +e+g+ W++ l k gr+++++GWk+F+ +n+ +++ +++Fkl++ +++++v+++++ KFK38489.1 162 FLVARVTASNLSKDILLLPMDFSRSNGLMNRK-CEIILLNEDGKPWRLLLGNYKLHGRVYIKSGWKSFCCENRGRANGVLTFKLVQ-DGTTPVLQLYS 257 66778999******************887655.59***************77788888**************************99.67778888876 PP | |||||||
3 | B3 | 38.7 | 1.8e-12 | 268 | 359 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 f++ ++ ++++++ l+lp +f++++g+++++ +++l d+ g + + l + k g++ l+k W+eF++ ng+ +g+++ ++l+++ ++++ + KFK38489.1 268 FLTLSLTTYTFRTKKLCLPATFVKANGIENAR--KIILVDRYGIKRTTSLEPEDKYGSMRLGKEWREFCEVNGVYTGESFKLELIKEeEDTTIH 359 6667789999****************988555..8********9999999778888899**************************986666444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-21 | 6 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-21 | 9 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.744 | 11 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.83E-18 | 12 | 102 | No hit | No description |
SMART | SM01019 | 4.7E-22 | 14 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-10 | 23 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-16 | 159 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.92E-16 | 161 | 256 | No hit | No description |
SuperFamily | SSF101936 | 1.53E-17 | 161 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-15 | 162 | 258 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-21 | 162 | 259 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.422 | 162 | 259 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-14 | 260 | 366 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-13 | 262 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.3E-11 | 268 | 359 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.6E-13 | 268 | 367 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.011 | 268 | 366 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.09E-10 | 279 | 362 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MKNGSNSTPR TPHFFKPLLP GFHCHLNIPI AFFSKYLAGT TNKGSVVVKL RSDASDVIWE 60 VKMDGQRLTQ GWQKFVTSHD LRVGDILVFR HDGDLLFHVT PFGPSCCEIP YDDDDGDNGD 120 GDDDDDDDDG DGDDVIQLSS ESNSEKYQHI REAGSSLDHS HFLVARVTAS NLSKDILLLP 180 MDFSRSNGLM NRKCEIILLN EDGKPWRLLL GNYKLHGRVY IKSGWKSFCC ENRGRANGVL 240 TFKLVQDGTT PVLQLYSSSS SSTSQYRFLT LSLTTYTFRT KKLCLPATFV KANGIENARK 300 IILVDRYGIK RTTSLEPEDK YGSMRLGKEW REFCEVNGVY TGESFKLELI KEEEDTTIHL 360 LKFCSKES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK38489.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488930.1 | 1e-168 | PREDICTED: B3 domain-containing protein REM10-like | ||||
TrEMBL | A0A087H8N7 | 0.0 | A0A087H8N7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H8N7 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 2e-85 | B3 family protein |