PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK38309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 38882.2 Da PI: 4.918 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.8 | 6.7e-20 | 42 | 87 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l+++v+++G ++W++Iar ++ gR++k+c++rw + KFK38309.1 42 KGPWSPEEDEVLAKLVEKFGARNWSLIARSIP-GRSGKSCRLRWCNQ 87 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 94 | 138 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+ Ed+ ++ a++ +G++ W+ Ia+ ++ gRt++++k++w++ KFK38309.1 94 RNSFTEVEDQAIIAAHAIHGNK-WAIIAKLLP-GRTDNNIKNHWNST 138 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.563 | 37 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-31 | 40 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 41 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-19 | 42 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-26 | 43 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.64E-15 | 44 | 86 | No hit | No description |
PROSITE profile | PS51294 | 20.539 | 93 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 93 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 94 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-11 | 96 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-23 | 96 | 142 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEEIGKRSET MESEMGFGEV EESATMVGDG GGYGGDGKER VKGPWSPEED EVLAKLVEKF 60 GARNWSLIAR SIPGRSGKSC RLRWCNQLDP SVKRNSFTEV EDQAIIAAHA IHGNKWAIIA 120 KLLPGRTDNN IKNHWNSTLR RRFTDFEMAT TNTASSEETL SSDGGGHVST PLVSSEGKEA 180 TSMEMSEEQC EEKSNGEGIS SREEVNDPPT LFRPVARLSS FNLNNHMEGY SSSSKQDAAM 240 LRLLEGAYSE RFVPQICGRG CCSNNPVSIF QQNSLLGPEF VDYLDPPTFP SYELAAIATD 300 ISRLAWMRSG LESSSVRAME EAAGWLRPQG SRGHRDRYLV SEQGKNIPNV LST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-39 | 39 | 143 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-39 | 39 | 143 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00337 | DAP | Transfer from AT3G09230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK38309.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC011436 | 1e-120 | AC011436.7 Arabidopsis thaliana chromosome III BAC F3L24 genomic sequence, complete sequence. | |||
GenBank | ATHMYB | 1e-120 | D10936.1 Arabidopsis thaliana atmyb1 gene for ATMYB1 protein, complete cds. | |||
GenBank | AY550295 | 1e-120 | AY550295.1 Arabidopsis thaliana MYB transcription factor (At3g09230) mRNA, complete cds. | |||
GenBank | BT026429 | 1e-120 | BT026429.1 Arabidopsis thaliana At3g09230 mRNA, complete cds. | |||
GenBank | CP002686 | 1e-120 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407701.1 | 0.0 | transcription factor MYB1 | ||||
Swissprot | Q42575 | 0.0 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A087H857 | 0.0 | A0A087H857_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H857 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8492 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 0.0 | myb domain protein 1 |
Publications ? help Back to Top | |||
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