PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK38309.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

MYB

Protein Properties

Length: 353aa MW: 38882.2 Da PI: 4.918

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK38309.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.8	6.7e-20	42	87	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l+++v+++G ++W++Iar ++ gR++k+c++rw + KFK38309.1 42 KGPWSPEEDEVLAKLVEKFGARNWSLIARSIP-GRSGKSCRLRWCNQ 87 79****************************.*********985 PP
2	Myb_DNA-binding	52.1	1.5e-16	94	138	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+ Ed+ ++ a++ +G++ W+ Ia+ ++ gRt++++k++w++ KFK38309.1 94 RNSFTEVEDQAIIAAHAIHGNK-WAIIAKLLP-GRTDNNIKNHWNST 138 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.563	37	92	IPR017930	Myb domain
SuperFamily	SSF46689	2.13E-31	40	135	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-16	41	90	IPR001005	SANT/Myb domain
Pfam	PF00249	7.7E-19	42	87	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-26	43	95	IPR009057	Homeodomain-like
CDD	cd00167	1.64E-15	44	86	No hit	No description
PROSITE profile	PS51294	20.539	93	143	IPR017930	Myb domain
SMART	SM00717	1.3E-15	93	141	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	94	138	IPR001005	SANT/Myb domain
CDD	cd00167	3.28E-11	96	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.5E-23	96	142	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEEIGKRSET MESEMGFGEV EESATMVGDG GGYGGDGKER VKGPWSPEED EVLAKLVEKF 60 GARNWSLIAR SIPGRSGKSC RLRWCNQLDP SVKRNSFTEV EDQAIIAAHA IHGNKWAIIA 120 KLLPGRTDNN IKNHWNSTLR RRFTDFEMAT TNTASSEETL SSDGGGHVST PLVSSEGKEA 180 TSMEMSEEQC EEKSNGEGIS SREEVNDPPT LFRPVARLSS FNLNNHMEGY SSSSKQDAAM 240 LRLLEGAYSE RFVPQICGRG CCSNNPVSIF QQNSLLGPEF VDYLDPPTFP SYELAAIATD 300 ISRLAWMRSG LESSSVRAME EAAGWLRPQG SRGHRDRYLV SEQGKNIPNV LST

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEEIGKRSET MESEMGFGEV EESATMVGDG GGYGGDGKER VKGPWSPEED EVLAKLVEKF  60
GARNWSLIAR SIPGRSGKSC RLRWCNQLDP SVKRNSFTEV EDQAIIAAHA IHGNKWAIIA  120
KLLPGRTDNN IKNHWNSTLR RRFTDFEMAT TNTASSEETL SSDGGGHVST PLVSSEGKEA  180
TSMEMSEEQC EEKSNGEGIS SREEVNDPPT LFRPVARLSS FNLNNHMEGY SSSSKQDAAM  240
LRLLEGAYSE RFVPQICGRG CCSNNPVSIF QQNSLLGPEF VDYLDPPTFP SYELAAIATD  300
ISRLAWMRSG LESSSVRAME EAAGWLRPQG SRGHRDRYLV SEQGKNIPNV LST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-39	39	143	55	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-39	39	143	55	159	MYB PROTO-ONCOGENE PROTEIN
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK38309.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATAC011436	1e-120	AC011436.7 Arabidopsis thaliana chromosome III BAC F3L24 genomic sequence, complete sequence.
GenBank	ATHMYB	1e-120	D10936.1 Arabidopsis thaliana atmyb1 gene for ATMYB1 protein, complete cds.
GenBank	AY550295	1e-120	AY550295.1 Arabidopsis thaliana MYB transcription factor (At3g09230) mRNA, complete cds.
GenBank	BT026429	1e-120	BT026429.1 Arabidopsis thaliana At3g09230 mRNA, complete cds.
GenBank	CP002686	1e-120	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407701.1	0.0	transcription factor MYB1
Swissprot	Q42575	0.0	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A087H857	0.0	A0A087H857_ARAAL; Uncharacterized protein
STRING	A0A087H857	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	0.0	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]