PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK38192.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 450aa MW: 49722.6 Da PI: 6.5221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK38192.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	264	311	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq KFK38192.1 264 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 311 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.05E-10	258	315	No hit	No description
SuperFamily	SSF47459	5.37E-17	258	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-17	260	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	260	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	264	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	266	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MENELFMNVG VSHPPEMTSS PSLNWVSMET TQPMDPSLTR DCFFWEKSTE QSIFDSALSS 60 LVSSPTPSNS NFSGGGRDGG DNFVIRELIG KLGNIGEIYG SGYATPMSSP PPRSMLPAMK 120 TSPLAEFSGD PGFAERAARF SCFGSRSFNG RTNSPFPLNT GPTATTNGKM TRVSSTPSLK 180 PLTSQIPAGE YSGEVGRKRK AKAKSKQNSP TIASLSPNLS KEIEEKEDSD SKRSKKSEEN 240 AKEVDDPYKD FIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML 300 DEIINYVQSL QRQVEFLSMK LSSVNTRLDF NMEALVSKDI FHSSNNNLMH QQVLQLESSS 360 ETLQLNPNIS SNNIMDPLET SETRSFVSHL PSLTHFTDSI SQYSTFSEDD LHSVIQMGFA 420 QNQIREANQT QPHTFQGPSS QVPSHMKAEL

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MENELFMNVG VSHPPEMTSS PSLNWVSMET TQPMDPSLTR DCFFWEKSTE QSIFDSALSS  60
LVSSPTPSNS NFSGGGRDGG DNFVIRELIG KLGNIGEIYG SGYATPMSSP PPRSMLPAMK  120
TSPLAEFSGD PGFAERAARF SCFGSRSFNG RTNSPFPLNT GPTATTNGKM TRVSSTPSLK  180
PLTSQIPAGE YSGEVGRKRK AKAKSKQNSP TIASLSPNLS KEIEEKEDSD SKRSKKSEEN  240
AKEVDDPYKD FIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML  300
DEIINYVQSL QRQVEFLSMK LSSVNTRLDF NMEALVSKDI FHSSNNNLMH QQVLQLESSS  360
ETLQLNPNIS SNNIMDPLET SETRSFVSHL PSLTHFTDSI SQYSTFSEDD LHSVIQMGFA  420
QNQIREANQT QPHTFQGPSS QVPSHMKAEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK38192.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_187390.1	0.0	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A087H7U0	0.0	A0A087H7U0_ARAAL; Uncharacterized protein
STRING	A0A087H7U0	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]