PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38178.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 445aa    MW: 48592.9 Da    PI: 5.7293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38178.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06373395426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C++f  +  C++G++C+F H+
  KFK38178.1 373 KPCMYFNSSRGCRHGANCSFQHD 395
                 69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.436369397IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4373395IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5373396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5374404IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRKSKRVSWP PDFKLCQGLI LRNSHFHHGM VRLFISEDSP SQVGSESQDH LQAKSSGASH  60
PNDGNLPPGF GGHLSADGLQ IKLSDIPVIK WKRSVRILLD EEWRVVAGEE SEEVEAQNQR  120
ELRVLEAFYP GASSIPPNPS VLADVENSQY DDQQTTVIPI LPVEDDDIVM DSASDLPNQF  180
GVEVGTEPSV TNDNMPTVAT LPVGSEIMAA LAAISNSKEQ GSSLIDQDLL IKILSNPKLV  240
ENLVANRGAT SVSSTASSLL PSTYEANGVV TTTPASSNGQ FYPQPTVTHI PPMVYPPPAP  300
SDHPNYGAPP ARDPSYYKNL IQQHGGERQE TPPIQQHLGY HYNVQPGGGP NPEMVNSNNN  360
NQRPRDSKPK IMKPCMYFNS SRGCRHGANC SFQHDASVYQ PRNINNGNIN TGNISNGNIS  420
TGNINSGNIN TYETQNAKRM RFERD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38178.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416457.10.0zinc finger CCCH domain-containing protein 6 isoform X2
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A087H7S60.0A0A087H7S6_ARAAL; Uncharacterized protein
STRINGA0A087H7S60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]