PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK38177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ARF | ||||||||
Protein Properties | Length: 901aa MW: 99695.3 Da PI: 5.9119 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2e-24 | 155 | 256 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l KFK38177.1 155 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQL 249 99*********************999****996444444..8************************************************..4577778 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ KFK38177.1 250 MVGVRRA 256 *****97 PP | |||||||
2 | Auxin_resp | 110.1 | 2.2e-36 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F ++YnPra+++eFv++++k++ka+ +++s GmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+ KFK38177.1 281 AAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICgSQLSTGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 364 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-45 | 145 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-42 | 147 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.74E-23 | 154 | 255 | No hit | No description |
Pfam | PF02362 | 4.6E-22 | 155 | 256 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 155 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-25 | 155 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-31 | 281 | 364 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.0E-9 | 789 | 878 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.064 | 792 | 876 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.61E-7 | 806 | 871 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 901 aa Download sequence Send to blast |
MASLACVEDK MKISGLVNGG TTTTTTQSTL LEEMKLLKDQ SGTRKPVINS ELWHACAGPL 60 VCLPQVGSLV YYFSQGHSEQ VAVSTRRSAT TQVPNYPNLP SQLMCQVHNV TLHADKDSDE 120 IYAQMSLQPV HSERDVFPVP DFGLMRGSKH PTEFFCKTLT ASDTSTHGGF SVPRRAAEKL 180 FPPLDYTAQP PTQELVVRDL HENTWTFRHI YRGQPKRHLL TTGWSLFVGS KRLRAGDSVL 240 FIRDEKSQLM VGVRRANRQQ QALPSSVLSA DSMHIGVLAA AAHATANRTP FLIFYNPRAC 300 PAEFVIPLAK YRKAICGSQL STGMRFGMMF ETEDSGKRRY MGTIVGISDL DPLRWPGSKW 360 RNLQVEWDEP GCNDKPTRVS PWDIETPESL FIFPSLTSGL KRQLHPSYFA GETEWGSLIK 420 RPLIRVPDSG NGMLPYASFP NNMASEQLMK MMMRPHNNQN ATSFMSEMQQ NVLMGHHGGF 480 LGDMKMQQPM VMNQKSEMVQ QESKLTVNPS ASNTSGQDQT LSQSMNAPAK PEQPTLSGCS 540 SGRVKHGHEQ SMEQANQVTT VTVCNEEKVN PLNQKPGGLS ALQADDPCPD ISQQMYPPQS 600 DPVNGFSFLE TDELTSQVSS FQSLAGSYKQ PLMLSSPDSS AVVLPDSTNS SIFHDVWDNQ 660 LNGLKFDQFS PLMQQDLYAC QNMCMSNSTN SNILDPPLSN TVLDDFCAIK ETDFQNHPSG 720 CLVGNNNTSF AQDVQSQITS ASFADSQPFS RQDFPDNSGG TGTSSSNVDF DESSLLQNSK 780 GSWQKLATPR VRTYTKVQKT GSVGRSIDVT SFRDYEELKS AIECMFGLEG LLTRPQSSGW 840 KLVYVDYESD VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AGMNDIKTSV 900 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 389 | 2 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK38177.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353257 | 0.0 | AK353257.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-33-P01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416458.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A087H7S5 | 0.0 | A0A087H7S5_ARAAL; Auxin response factor | ||||
STRING | A0A087H7S5 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |