PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK38048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 21539.1 Da PI: 8.9552 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.5 | 6.7e-05 | 1 | 37 | 16 | 55 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +N+ + Lr+l P + k+ + a+i ++e+Ik+Lq KFK38048.1 1 MNEHLKSLRSLTPCF---YIKRGDQASIIAGVIEFIKELQ 37 8*************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-5 | 1 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-8 | 1 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.442 | 1 | 36 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.25E-6 | 1 | 41 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0010374 | Biological Process | stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MNEHLKSLRS LTPCFYIKRG DQASIIAGVI EFIKELQQLV QVLESKKRRK TLNRPSFPYD 60 QQTLEPSILA ATATNTNTRV PFSRIENVMT TSTFKEVGAC CNSPHANVEA KISGSNVVLR 120 VVSRRIAGQL VRIISILEKL SFQVLHLNIT SMEETVLYFF VVKIGLECHL SLEELTLEVQ 180 KSFVSEVIVS AS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 49 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Together with FMA and SPCH, regulates the stomata formation. Required for the differentiation of stomatal guard cells, by promoting successive asymmetric cell divisions and the formation of guard mother cells. Promotes the conversion of the leaf epidermis into stomata. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK38048.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV, flagellin, and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002882450.1 | 1e-123 | transcription factor MUTE | ||||
Swissprot | Q9M8K6 | 1e-123 | MUTE_ARATH; Transcription factor MUTE | ||||
TrEMBL | A0A087H7E6 | 1e-136 | A0A087H7E6_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H7E6 | 1e-137 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7073 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06120.1 | 1e-125 | bHLH family protein |