PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK37976.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NF-YA

Protein Properties

Length: 286aa MW: 31338.2 Da PI: 9.6479

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK37976.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	92.8	4.3e-29	132	193	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRaklee...ekkld.eksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVN+KQy++I++RRq+Rak+++ ++kl+ +++rkpy+h+SRh hAlrRpRgsgGrF KFK37976.1 132 DGPIYVNSKQYHGIIRRRQSRAKAAAvleQNKLSsSRCRKPYMHHSRHLHALRRPRGSGGRF 193 57********************99888899742789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.9E-31	130	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.393	131	196	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.8E-24	134	193	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.1E-22	134	156	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.1E-22	170	193	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MAMQTVREGV LSAPQISWWN AFGSQPLAPE NSDSFAGVKV GSAGETTEHG VDKQSNSVSH 60 LAFSLGDAKS SRVVPKTHGV AFSLQSPCLE LGFTQPPMYT KYPCVEQQYY GVVSAYGSQG 120 RVMLPLNMET EDGPIYVNSK QYHGIIRRRQ SRAKAAAVLE QNKLSSSRCR KPYMHHSRHL 180 HALRRPRGSG GRFLNTKSQN MEKSGTNAKK DDETKQPQPQ QSNSQNSEVL HPENGTINLS 240 NGLNVSGSEV TSMNYFLNTP VHSLGGMVMP SKWIAAMDNG CCSFKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	5e-16	132	194	2	60	HAPB protein
4g92_A	5e-16	132	194	2	60	HAPB protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK37976.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352991	0.0	AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_187220.1	1e-177	nuclear factor Y, subunit A2
Swissprot	Q9M9X4	1e-178	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A087H774	0.0	A0A087H774_ARAAL; Nuclear transcription factor y subunit a-10
STRING	A0A087H774	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-170	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]