PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK37976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NF-YA | ||||||||
Protein Properties | Length: 286aa MW: 31338.2 Da PI: 9.6479 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 92.8 | 4.3e-29 | 132 | 193 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRaklee...ekkld.eksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVN+KQy++I++RRq+Rak+++ ++kl+ +++rkpy+h+SRh hAlrRpRgsgGrF KFK37976.1 132 DGPIYVNSKQYHGIIRRRQSRAKAAAvleQNKLSsSRCRKPYMHHSRHLHALRRPRGSGGRF 193 57**********************99888899742789***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.9E-31 | 130 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.393 | 131 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.8E-24 | 134 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-22 | 134 | 156 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-22 | 170 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAMQTVREGV LSAPQISWWN AFGSQPLAPE NSDSFAGVKV GSAGETTEHG VDKQSNSVSH 60 LAFSLGDAKS SRVVPKTHGV AFSLQSPCLE LGFTQPPMYT KYPCVEQQYY GVVSAYGSQG 120 RVMLPLNMET EDGPIYVNSK QYHGIIRRRQ SRAKAAAVLE QNKLSSSRCR KPYMHHSRHL 180 HALRRPRGSG GRFLNTKSQN MEKSGTNAKK DDETKQPQPQ QSNSQNSEVL HPENGTINLS 240 NGLNVSGSEV TSMNYFLNTP VHSLGGMVMP SKWIAAMDNG CCSFKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 5e-16 | 132 | 194 | 2 | 60 | HAPB protein |
4g92_A | 5e-16 | 132 | 194 | 2 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK37976.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352991 | 0.0 | AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187220.1 | 1e-177 | nuclear factor Y, subunit A2 | ||||
Swissprot | Q9M9X4 | 1e-178 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A087H774 | 0.0 | A0A087H774_ARAAL; Nuclear transcription factor y subunit a-10 | ||||
STRING | A0A087H774 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-170 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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