PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37803.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 279aa    MW: 29477.7 Da    PI: 7.6877
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37803.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.8e-40561571101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael+l++
  KFK37803.1  56 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSLVQ 154
                 7***********************9989**********************************************************************9 PP

      DUF260  99 eel 101
                 ++l
  KFK37803.1 155 SQL 157
                 985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.26355157IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3956154IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MADQQQRGHN TSDSRRKSSA GKRTSSQHTP TTSSLTSGGG GAMATATTTG TGTASPCGAC  60
KFLRRKCVSG CIFAPHFGSD QGAARFAAVH KVFGASNVSK LLHHIPVNRR HDAVVTISYE  120
AQARLSDPVY GCVSTILALQ QQVASLQAEL SLVQSQLINS RVAMANVMQQ QQQQNHHQQQ  180
LVVMQQPEYS NNSSASTTLA GAAMNSFATA AEAAAVSYDI MAPANLEHSL QQMPTHQQGR  240
GGDQHEDEEE SGVDFSAGVG STAVAAAEVI FPADAFHRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-40441581112LOB family transfactor Ramosa2.1
5ly0_B7e-40441581112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37803.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882305.11e-149LOB domain-containing protein 20
SwissprotQ9SRV31e-147LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A087H6Q10.0A0A087H6Q1_ARAAL; Uncharacterized protein
STRINGA0A087H6Q10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-112LOB domain-containing protein 20