PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37734.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 424aa    MW: 48114.2 Da    PI: 9.34
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37734.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-17104150148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEd +l+++v+q+G + W+ I++++  gR +kqc++rw+++l
       KFK37734.1 104 KGQWSEEEDRKLIKLVRQHGERKWAMISEKLE-GRAGKQCRERWHNHL 150
                      799*****************************.*************97 PP
2Myb_DNA-binding53.84.5e-17156198145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE++ lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
       KFK37734.1 156 KDSWSKEEEKVLVEAHTRIGNK-WAEIAKLIQ-GRTENSIKNHWN 198
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.20599154IPR017930Myb domain
SMARTSM007176.7E-16103152IPR001005SANT/Myb domain
SuperFamilySSF466893.63E-28103197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-26105157IPR009057Homeodomain-like
PfamPF139213.8E-19107165No hitNo description
CDDcd001671.08E-14107150No hitNo description
SMARTSM007171.7E-13155203IPR001005SANT/Myb domain
PROSITE profilePS5129418.526155205IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-20158203IPR009057Homeodomain-like
CDDcd001671.22E-9158201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEYRRIHHVA APPLTAVDRF LYGQKNDALC SKKQERSSIL KTTMVTEIRN DNKENLLFGP  60
KKEKNLAVNG GNRNVIGEMI VKGATSDYQK NTTCKKRPYK YLIKGQWSEE EDRKLIKLVR  120
QHGERKWAMI SEKLEGRAGK QCRERWHNHL RPDIKKDSWS KEEEKVLVEA HTRIGNKWAE  180
IAKLIQGRTE NSIKNHWNAT KRRQNSKRKH KRSKNSDMDD VSPSSKRPRV LEDYIKSIED  240
NDKDNGENII TNTGNNVLSM SNLDQINSDG DSTLSLLDDP YDEELVFLKN IFANHPISLE  300
NIDFSQGPEE IITWSSSTGL MVKNPKPNPN KNTVSTHHGT MAPTGPANTP HLASDIYLSY  360
LLNGSVSCSS PSVMSSMSSN SMEHSGYNKL LEPQASATSE RREMDLIEML SGSTQASNIC  420
FPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-431022042104MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-431022042104C-Myb DNA-Binding Domain
1msf_C5e-431022042104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200211KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37734.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196201e-164AY519620.1 Arabidopsis thaliana MYB transcription factor (At5g11050) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196666.10.0myb domain protein 64
SwissprotQ9FY600.0MYB64_ARATH; Transcription factor MYB64
TrEMBLA0A087H6I20.0A0A087H6I2_ARAAL; Uncharacterized protein
STRINGA0A087H6I20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-173myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]