PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK37715.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

LBD

Protein Properties

Length: 266aa MW: 28524.7 Da PI: 8.8048

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK37715.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.2	2.9e-29	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q ++e+ KFK37715.1 4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDNLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQNAVEA 102 6*************************************************************************************************9 PP DUF260 95 allkee 100 +l +e+ KFK37715.1 103 VLKGEP 108 988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.048	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MRVSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDN 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGEPIK EIATDAATNG 120 HGPPLKIYDI RHNSKDENSA AKDTVSTDLK RVKPRRTKRL AAVVNPSESE GKSGGGVASH 180 ESSLSHQSEI VAAAHEGDSK ESKSIVSEVM ALSSPVGQGS GEIKLDLTLG LEPVSRAYDV 240 VPVKKRKIGV FATCQKESTC KTELML

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK37715.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299215.1	1e-168	LOB domain-containing protein 41
Swissprot	Q9M886	1e-160	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A087H6G3	0.0	A0A087H6G3_ARAAL; Uncharacterized protein
STRING	A0A087H6G3	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7721	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-162	LOB domain-containing protein 41