PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37707.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 373aa    MW: 42877.8 Da    PI: 8.1893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37707.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-13322368347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       WT+eE+e l ++vk++G+  Wk I +  +     Rt+ ++k++w+++
       KFK37707.1 322 FWTPEEEEALREGVKKYGKA-WKHIKNLNPdvlADRTEVDLKDKWRNF 368
                      6*****************99.************9*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.447315373IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-13316370IPR009057Homeodomain-like
SuperFamilySSF466893.8E-13317368IPR009057Homeodomain-like
SMARTSM007172.0E-9319371IPR001005SANT/Myb domain
CDDcd116601.33E-15321367No hitNo description
PfamPF002493.0E-10323367IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MALIDNWVLE FFLRRQQNPT LYATSLFSSL KPNDSVNLKI TAVLRDLSNS LNRGKVNEEM  60
LDLLEVLEKL QEGSVIMGSL KSAYCWIAVE CTVMFMWPVT VSEGLLSDAL ERIWEKRIGV  120
LKERKSCLVT RELLKWESDL NKAVYEPEMY QKIRETNIRY IAISYLNQFL KEQWALLGCS  180
SLESEARRWL FKRKKPNGDK NPVDVDVDDN VNEQEEEHEA SHDKGDIRVA RELKDCLMEI  240
QGVLESSTRQ GQGTNNAIDV SRKRDRANRT EIGGGQGDNG GEDPGSSSSG RRVRPHLPTP  300
KPLDVSLLKQ VKPPRPRRPT KFWTPEEEEA LREGVKKYGK AWKHIKNLNP DVLADRTEVD  360
LKDKWRNFIG RDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408414.11e-162uncharacterized protein LOC18023821
TrEMBLA0A087H6F50.0A0A087H6F5_ARAAL; Uncharacterized protein
STRINGA0A087H6F50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-132TRF-like 5