PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37619.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 204aa    MW: 23590.6 Da    PI: 9.4911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37619.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-162471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l +++  +G g W+++a+  g++Rt+k+c++rw++yl
       KFK37619.1 24 KGPWTMEEDLILFNYILNHGEGLWNSVAKSSGLKRTGKSCRLRWLNYL 71
                     79********************************************97 PP
2Myb_DNA-binding55.71.1e-1777120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++++lG++ W++Ia++++ gRt++++k++w++
       KFK37619.1  77 RGNITSEEQLLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 120
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3771971IPR017930Myb domain
SuperFamilySSF466891.5E-2922118IPR009057Homeodomain-like
SMARTSM007173.6E-122373IPR001005SANT/Myb domain
PfamPF002492.8E-152471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-222578IPR009057Homeodomain-like
CDDcd001671.22E-82671No hitNo description
PROSITE profilePS5129424.35272126IPR017930Myb domain
SMARTSM007177.8E-1676124IPR001005SANT/Myb domain
PfamPF002494.5E-1677120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2479126IPR009057Homeodomain-like
CDDcd001678.47E-1281120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
METTTKKIGR GKERVTEEEV TVRKGPWTME EDLILFNYIL NHGEGLWNSV AKSSGLKRTG  60
KSCRLRWLNY LRPDVRRGNI TSEEQLLIIQ LHAKLGNRWS KIAKHLPGRT DNEIKNFWRT  120
KIQRHMKVSS SENMKIHHCS ANSQTSEMTT TDQGSSSKPF DMAESFSPAT TTSFNLMEQS  180
NENYWNVEDL WSVQLLNGEH HQVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-272412427126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00324DAPTransfer from AT3G01530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37619.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180911e-166AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03.
GenBankBT0055741e-166BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496298.11e-121PREDICTED: transcription factor MYB57-like
SwissprotQ9SSA11e-116MYB57_ARATH; Transcription factor MYB57
TrEMBLA0A087H6671e-150A0A087H667_ARAAL; Uncharacterized protein
STRINGA0A087H6671e-151(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-109myb domain protein 57