PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK37587.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | WRKY | ||||||||
Protein Properties | Length: 240aa MW: 26692.8 Da PI: 8.6562 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 3e-30 | 40 | 99 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+++v+r+ +d +++++tYeg+Hnh+ KFK37587.1 40 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRRQVQRCVDDMSILITTYEGTHNHP 99 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-31 | 25 | 101 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-28 | 33 | 101 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.759 | 35 | 101 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-36 | 40 | 100 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-27 | 41 | 99 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MNKVTGKRSS PSGDADDIGQ QNNVKRARVC VRARCDTLTM NDGCQWRKYG QKIAKGNPCP 60 RAYYRCTVAP GCPVRRQVQR CVDDMSILIT TYEGTHNHPL PLSATAMAST TAAAASMLLS 120 GSSTSLQSNS TMAGLETEMI KNDMDYDECT RRNVEQDSLH KFSLSRIGFY QELTIGFYQE 180 LTSFCARGKT MYCVANLILI CWVTGSGYCM PLPIGHIIMT MVMMGINGKK IRYSEDQVMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-23 | 27 | 101 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK37587.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437679.1 | 2e-75 | PREDICTED: probable WRKY transcription factor 72 | ||||
TrEMBL | A0A087H635 | 0.0 | A0A087H635_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H635 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6736 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 4e-48 | WRKY DNA-binding protein 72 |