PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37540.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 338aa    MW: 38397.7 Da    PI: 5.1074
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37540.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.2e-06940334
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                +r C+ ++   ++ +C+ ++  lC +C  + H
  KFK37540.1  9 NRLCDYCDTSVAIVYCKADSAKLCLSCDKQVH 40
                789******99******************999 PP
2zf-B_box26.91e-085395442
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
                  C+ +++ + + fCe+ ++ lC++C  e H g    H+++p+
  KFK37540.1 53 LLCDSCDDSPSSVFCETERSVLCQNCDWERHTGsssvHSRRPV 95
                57*****************************889999998875 PP
3CCT613.8e-21294337144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k++
  KFK37540.1 294 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAD 337
                 899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-12754IPR000315B-box-type zinc finger
PROSITE profilePS501199.84754IPR000315B-box-type zinc finger
CDDcd000211.09E-41054No hitNo description
PROSITE profilePS5011910.2535095IPR000315B-box-type zinc finger
PfamPF006437.6E-65394IPR000315B-box-type zinc finger
CDDcd000217.49E-85495No hitNo description
SMARTSM003360.115595IPR000315B-box-type zinc finger
PfamPF062034.5E-15294336IPR010402CCT domain
PROSITE profilePS5101714.743294336IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEDEEAHHNR LCDYCDTSVA IVYCKADSAK LCLSCDKQVH VTNQLFSKHF RSLLCDSCDD  60
SPSSVFCETE RSVLCQNCDW ERHTGSSSVH SRRPVEGFTG CPSVTEFLAI VGLDDLSEKS  120
LFPDSELLLW ETPEIVSLND LVASDDGSGH NFRAMDVPPL PKNRHATCGK HKDEMIRQLR  180
GLARSEPSCL KFEAVDAELD DGFQFLTQEN DDDLFSSCDV NGLKWFEGSA DQEDDDSLYS  240
SLLRNLSDSN EKQNRRCQES SVMVPVSDNR CEEETVMVPV CNSTTRSILP SHERNSALSR  300
YKEKKKSRRY EKHIRYESRK VRAESRTRIR GRFAKADP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935981e-51AB493598.1 Arabidopsis thaliana At2g47890 mRNA for hypothetical protein, partial cds, clone: RAAt2g47890.
GenBankBT0234131e-51BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182310.11e-171B-box type zinc finger protein with CCT domain-containing protein
SwissprotO822561e-172COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A087H5Y80.0A0A087H5Y8_ARAAL; Uncharacterized protein
STRINGA0A087H5Y80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-151B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]