PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37416.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 514aa    MW: 57223.3 Da    PI: 5.4203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37416.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.3e-14348394455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YIk+Lq
  KFK37416.1 348 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIKELQ 394
                 799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5049236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.682344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-15347398No hitNo description
SuperFamilySSF474591.57E-19347415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-19348411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-11348394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MMNMSELGWD DEQRSMVNAV LGNLAYEFLK SNSNSNQNLF LVMGSDDSLN KKLSSLVDWP  60
NSENFSWNYA IFWQQTMSRS GQQVLGWGDG CCREPNDLEE SKMVSSFGLE EEERLQEMRK  120
RVLQKLHRLF GGSDEDNYAL SLEKVTATEI FFLASMYFFF NHGEGGPGNC YASRKHVWLS  180
DAVNSDSDYC FRSFMAKSAG IRTIVMVPTD AGVLEVGSVW SLPENVELVN SVQGLFMRSV  240
NVKPPLNGGI HKLFGQDLNN SDHAYPKKLE VDRFTPQGSF GVKVQENVFV GSSVPASTNT  300
QLEKSDSCTE KGPASLLALG GGAGTIVEEK RPRKRGRKPA NGREEPLNHV EAERQRREKL  360
NQRFYALRAV VPNISKMDKA SLLGDAISYI KELQEKVKIM EAERGRTESS LSESNQTTTS  420
PEINIQTINE EVVVRVNSPL DTHPASRIIH AMRNSEVNVM ESKLSLAEDT MFHTFVIKSS  480
NESDPLTKEK LIAAVSASTQ QPLPSSSSQV SGDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29342413273Transcription factor MYC2
5gnj_B3e-29342413273Transcription factor MYC2
5gnj_E3e-29342413273Transcription factor MYC2
5gnj_F3e-29342413273Transcription factor MYC2
5gnj_G3e-29342413273Transcription factor MYC2
5gnj_I3e-29342413273Transcription factor MYC2
5gnj_M3e-29342413273Transcription factor MYC2
5gnj_N3e-29342413273Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329337KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37416.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884075.10.0transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A087H5L40.0A0A087H5L4_ARAAL; Uncharacterized protein
STRINGA0A087H5L40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]