PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37309.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 595aa    MW: 65996.5 Da    PI: 4.7905
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37309.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.32.8e-862385932374
        GRAS   2 velLlecAeavssgdle....laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                 +e+L+++Ae +++  ++    laq +Larl+++ ++  +p+qR a+y+ + L + l++       + pp   ++++ + +++a+++fse+sP+l+f ++
  KFK37309.1 238 IEQLFNAAELLTTTTTSdqtiLAQGILARLNHHLNN-NTPFQRSAFYISQTLLSLLHS-------SPPPLLLTPESLILKISAYRTFSETSPFLQFVNF 328
                 6899999999887444444469**********9865.69******************9.......567777777889********************** PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                 t Nq Ile+ +g +++HiiDfdi++G+QW +L+q+L+ R++   sl+iT+++sp s+  ++ el+ t+e+L++fA e+++pfe+++l  + l + +++ 
  KFK37309.1 329 TSNQSILESCQGFDQIHIIDFDIGYGGQWSSLMQELSRRRN-RTSLKITAFASPPSTvsEEFELRFTEENLRSFAGEVKIPFEIELLSIELLLNQSYWP 426
                 ************************************99865.58*********998889999*************************999999999*** PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 + ++++Ea+ Vnl l+  +          + + +L+ +k+lsP+vvv++++ + +n+++F + ++ +l+yy++l +sl ++       + +vEr+l+++
  KFK37309.1 427 I-TSEKEAICVNLPLNSVYSS--------YLPLILRYLKQLSPNVVVCSDSGCVRNDAPFPNAVIGTLQYYTSLIESLGSG-----GGDDSVERFLVKP 511
                 9.899*********9776665........6788*********************************************999.....78889******** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                  i++v+++++++    ++ l  Wr+ ++++GF+pv++s++a++qa++l+++     g++ve++  s s+vl+W++++Lv+vSaW+
  KFK37309.1 512 MIEKVLMKRHRW---IEKVLLPWRNLFMQCGFTPVSFSSTAESQAECLVSRNVwRGGFHVEKRqsSSSIVLCWQRKELVTVSAWK 593
                 ***********9...778899********************************7777****664378899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.249211570IPR005202Transcription factor GRAS
PfamPF035149.6E-84238593IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MPLSFESFQG EGVFGFGSGL ASSDSHKTWF NQDKTRFRQE QEVEDLGYVV GEPNSVLEAL  60
RSPSPLLSHS TTTTLSSSHG GGAVTTTGDD DNKCSPMGLD DLDGVVLSPP TQEQSILKLI  120
MDPGSGFGVF DPGFSFGSGS LPVHETPNPL FSFQEHHQEL FTPNQFSPPP PAKRFNPGPG  180
PGPGPVFPFP DPDPDPGRFQ FPFQFQQQQQ QEPNQSTSLA TPVCMSTLMA GDDESVIIEQ  240
LFNAAELLTT TTTSDQTILA QGILARLNHH LNNNTPFQRS AFYISQTLLS LLHSSPPPLL  300
LTPESLILKI SAYRTFSETS PFLQFVNFTS NQSILESCQG FDQIHIIDFD IGYGGQWSSL  360
MQELSRRRNR TSLKITAFAS PPSTVSEEFE LRFTEENLRS FAGEVKIPFE IELLSIELLL  420
NQSYWPITSE KEAICVNLPL NSVYSSYLPL ILRYLKQLSP NVVVCSDSGC VRNDAPFPNA  480
VIGTLQYYTS LIESLGSGGG DDSVERFLVK PMIEKVLMKR HRWIEKVLLP WRNLFMQCGF  540
TPVSFSSTAE SQAECLVSRN VWRGGFHVEK RQSSSSIVLC WQRKELVTVS AWKCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2927259335375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295629.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A087H5A70.0A0A087H5A7_ARAAL; Uncharacterized protein
STRINGA0A087H5A70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]