PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37299.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GATA
Protein Properties Length: 270aa    MW: 30181.5 Da    PI: 8.5417
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37299.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18182216135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  KFK37299.1 182 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 216
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.8E-882269IPR016679Transcription factor, GATA, plant
SMARTSM004012.6E-16176226IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.56E-14177238No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13180214IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.227180212IPR000679Zinc finger, GATA-type
CDDcd002021.27E-13181228No hitNo description
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
PfamPF003207.6E-16182216IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDLYGLSSPD LLRIDDLLDF SNEDIFSASS STSTAATNSS SSFPPPQNPN FHHHHHHHLP  60
SSADHFLHDI CVPTDDAAHL EWLSQFVDDS FADYPANPLR GTMTSVKTEP SSFPGKPRSK  120
RSRVPAAFAG TWTPMQETDQ QQIHLTGKLI KPKKEPSSGG GGRHHHQSSS QGTTEEGGIR  180
RCTHCASEKT PQWRTGPLGP KTLCNACGVR FKSGRLVPEY RPASSPTFVL TQHSNSHRKV  240
MELRRQKEVM RQPPHVQLHH HHHHHHQSPF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436974.11e-139PREDICTED: GATA transcription factor 2
SwissprotO497411e-129GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A087H5970.0A0A087H597_ARAAL; GATA transcription factor
STRINGA0A087H5970.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-107GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]