PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK37287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 328aa MW: 35693.6 Da PI: 8.5089 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 160 | 214 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L +rqV vWFqNrRa+ k KFK37287.1 160 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTK 214 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.8 | 8.2e-40 | 160 | 248 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr + KFK37287.1 160 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLHKEVTELR-A 248 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.7E-33 | 1 | 119 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 141 | 214 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-18 | 146 | 217 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 156 | 216 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-15 | 158 | 220 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-16 | 160 | 214 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.09E-14 | 160 | 217 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 191 | 214 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.4E-11 | 216 | 249 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.9E-25 | 216 | 259 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSERDDGLGL SLSLGLSQQK EPSLKLNLMP FTASSSFHHT HNPNSSHLQN QKIHHNSWTH 60 LFQSSERNSH EVGSFLRGFD VNRAPSPATA VDIEEEVAGV SSPNSTVSSV SGNKRIERDL 120 AAARGGGGGE ENEAERASCS RGGGSGGSDD EDGGNGDGSR KKLRLSKEQA LVLEETFKEH 180 STLNPKQKLA LAKQLNLRTR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCD NLTEENRRLH 240 KEVTELRALK CSPNLYMHMT PPTTLTMCPS CERVASAATA AATSPPTASS SAPTGGGGRF 300 PTVVERPSPQ RASPWTAISL NNQSRLAH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 164 | SRKKLRL |
2 | 208 | 216 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK37287.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506430.1 | 1e-165 | PREDICTED: homeobox-leucine zipper protein ATHB-4-like | ||||
Swissprot | P92953 | 1e-144 | ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4 | ||||
TrEMBL | A0A087H585 | 0.0 | A0A087H585_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H585 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 2e-99 | homeobox-leucine zipper protein 4 |
Publications ? help Back to Top | |||
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