PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK37232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | B3 | ||||||||
Protein Properties | Length: 286aa MW: 32946.1 Da PI: 10.3281 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.6 | 6e-15 | 19 | 112 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk+l +d ++++ +p kf ++ ++ + +++l+ +grsW+v l + +g+y+++ kGW++F ++n+L +++f++F+ +g+++ v++f+ KFK37232.1 19 FFKILAYEDLWSESMRFIPHKFKTSVCKN--HPLKVILKVVWGRSWTVSL--SSFKGSYLMEkKGWEKFLNDNKLGDKEFLTFTNEGNNCL--SVSIFK 111 899999999999**********8888555..4568***************..666666555449********************6666666..999998 PP S CS B3 99 k 99 k KFK37232.1 112 K 112 7 PP | |||||||
2 | B3 | 49 | 1.1e-15 | 207 | 280 | 17 | 96 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +p +fa++h+ + e+++ ++ d++g+ W+v + + g+ ++++GW+ ++ gL +gDf++F+l++r+ e+v+ v KFK37232.1 207 AIPQDFANDHMPN--ETTKFIIHDPNGKPWDVVY--YYTEGQKLFSSGWRILARKYGLAVGDFCTFRLIKRR--EMVLEV 280 69*****999855..6679***************..66777789***********************99753..345555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-19 | 13 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.9E-17 | 15 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.63E-13 | 18 | 111 | No hit | No description |
PROSITE profile | PS50863 | 12.844 | 19 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-13 | 19 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-16 | 19 | 113 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-20 | 188 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 188 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.957 | 191 | 284 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-12 | 194 | 284 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-13 | 207 | 279 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.71E-13 | 208 | 280 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAKNRAFGSI QQDKDKASFF KILAYEDLWS ESMRFIPHKF KTSVCKNHPL KVILKVVWGR 60 SWTVSLSSFK GSYLMEKKGW EKFLNDNKLG DKEFLTFTNE GNNCLSVSIF KKNCKEMLTP 120 RKTTIISSSS SFSNVKKEEM SDVSPIIAEG SRRGRKEKKE RADEEEARKK SKKMKKKADN 180 NNVYEASSSL VPTFSFTIKP SKLIVAAIPQ DFANDHMPNE TTKFIIHDPN GKPWDVVYYY 240 TEGQKLFSSG WRILARKYGL AVGDFCTFRL IKRREMVLEV IHASQM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 273 | RLIKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK37232.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024010696.1 | 1e-118 | B3 domain-containing protein At5g18090 | ||||
TrEMBL | A0A087H530 | 0.0 | A0A087H530_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H530 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 3e-64 | VERDANDI |