PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37155.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 342aa    MW: 37419.2 Da    PI: 8.9085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37155.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10244286652
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                 +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik
  KFK37155.1 244 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIK 286
                 689*********************7....688**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.224238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-11241301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.76E-9242286No hitNo description
Gene3DG3DSA:4.10.280.106.6E-10243297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-7244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7244286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MYPSSSNKST AQDGGGDSHN NPYDSAAGTT RDFSSLGSQT NHNSPSHPPP PTRRQNNPNV  60
VGHYISGDPS SFGPDSGASS SLFRHRSSPA GFFDQHLPTT DPHGRPNGGY GGGGGGGERG  120
PSRLKSEARF SGGSSSNSHQ EHNSLPRISE AEAGATAING VASTSMSFGN VHNNWDNSSS  180
HISFTIDEPG KRSKTTDFFT LETQFSMPQT SLEMARMENM MNIPEDSVAC KVRAKRGFAT  240
HPRSIAERER RTRISGKLKK LQELVPNMDK QTSYADMLDL AVEHIKVTGK GNGEMHMWSM  300
QEAMMKRYDM FPNTMQESIE GKKDQGIKLE EKKIHSKNFN YM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044502e-66AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence.
GenBankCP0026852e-66CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506173.11e-155PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW811e-130BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A087H4V30.0A0A087H4V3_ARAAL; Transcription factor bhlh
STRINGA0A087H4V30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-124bHLH family protein