PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK37090.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 367aa MW: 40936.6 Da PI: 7.134

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK37090.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.7e-12	299	344	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +Av+YIk+Lq KFK37090.1 299 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 344 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.9	293	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-15	296	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.82E-11	297	346	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-13	298	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.9E-12	299	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	299	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MDSNTHNLYD PNHIPTSSSG SGLLRFRSAP SSVLTSFVDD EKTRFDSDRL LSRFVTSNGV 60 NNDMGSPNPS EFEEKSSPAN TSVSYSASAT LPPHEPSCFL GLPPHYPRQS KGLMNTIGLD 120 QFLAHTKPID SHLLRQNSSP AGMFTNDQNG YGTMRSLMNY GGGEEEDEES ASNSNGLRRH 180 CSLSSRPQPS SLGMLSQIPE IASESIATNF QYSHWNDPSS FIDNLSPLKR ESEEDGKLFL 240 GAQNGESGNR MQLLSHHLSL PKSSSTNSDM VSVDKYMHLQ DSVPCKIRAK RGCATHPRSI 300 AERVRRTRIS ERMRKLQELV PNMDKQTNTS DMLDLAVDYI KDLQRQYKIL NENRANCKCM 360 NKEKNLI

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MDSNTHNLYD PNHIPTSSSG SGLLRFRSAP SSVLTSFVDD EKTRFDSDRL LSRFVTSNGV  60
NNDMGSPNPS EFEEKSSPAN TSVSYSASAT LPPHEPSCFL GLPPHYPRQS KGLMNTIGLD  120
QFLAHTKPID SHLLRQNSSP AGMFTNDQNG YGTMRSLMNY GGGEEEDEES ASNSNGLRRH  180
CSLSSRPQPS SLGMLSQIPE IASESIATNF QYSHWNDPSS FIDNLSPLKR ESEEDGKLFL  240
GAQNGESGNR MQLLSHHLSL PKSSSTNSDM VSVDKYMHLQ DSVPCKIRAK RGCATHPRSI  300
AERVRRTRIS ERMRKLQELV PNMDKQTNTS DMLDLAVDYI KDLQRQYKIL NENRANCKCM  360
NKEKNLI

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK37090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002881830.1	0.0	transcription factor bHLH130 isoform X2
Swissprot	Q66GR3	0.0	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A087H4N8	0.0	A0A087H4N8_ARAAL; Uncharacterized protein
STRING	A0A087H4N8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]