PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37059.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 295aa    MW: 33009 Da    PI: 5.8432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37059.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.4e-09162209455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  KFK37059.1 162 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 209
                 79************************9....889****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-15156227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-8156213No hitNo description
PROSITE profilePS5088814.634158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15158226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDLTVGFGSR SGDGELNFSD EIRKLVTMPP ENTASFTALL EMPANQAMEL LHFTDTSSSH  60
IAPPSLHSFG TLNFPSDSLL LDRAARYSVI ATEQEQTGNI SGDSNSSGRV KTEPVETDSV  120
IGKRKEREKK VRSSVKKTKS SEEAEKLPYV HVRARRGQAT DNHSLAERAR REKINARMKL  180
LQELVPGCDK IQGTALVLDE IINHVQSLQR QVEMLSMRLA AVNPRIDFNL DTILASENGS  240
LMDGSFNGES YPQLQQWPFD GYQQPEWGRE EDHHHQTNFL MSSATLQPNQ VKMEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37059.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1766341e-176AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBankAY0654111e-176AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBankAY0965211e-176AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885016.11e-157transcription factor bHLH48
SwissprotQ8VZ021e-148BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A087H4K70.0A0A087H4K7_ARAAL; Uncharacterized protein
STRINGA0A087H4K70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.11e-146bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]