PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK37059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 295aa MW: 33009 Da PI: 5.8432 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.4e-09 | 162 | 209 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq KFK37059.1 162 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 209 79************************9....889****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.07E-15 | 156 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.45E-8 | 156 | 213 | No hit | No description |
PROSITE profile | PS50888 | 14.634 | 158 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-15 | 158 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 162 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-8 | 164 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDLTVGFGSR SGDGELNFSD EIRKLVTMPP ENTASFTALL EMPANQAMEL LHFTDTSSSH 60 IAPPSLHSFG TLNFPSDSLL LDRAARYSVI ATEQEQTGNI SGDSNSSGRV KTEPVETDSV 120 IGKRKEREKK VRSSVKKTKS SEEAEKLPYV HVRARRGQAT DNHSLAERAR REKINARMKL 180 LQELVPGCDK IQGTALVLDE IINHVQSLQR QVEMLSMRLA AVNPRIDFNL DTILASENGS 240 LMDGSFNGES YPQLQQWPFD GYQQPEWGRE EDHHHQTNFL MSSATLQPNQ VKMEL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK37059.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK176634 | 1e-176 | AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11. | |||
GenBank | AY065411 | 1e-176 | AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds. | |||
GenBank | AY096521 | 1e-176 | AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885016.1 | 1e-157 | transcription factor bHLH48 | ||||
Swissprot | Q8VZ02 | 1e-148 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A087H4K7 | 0.0 | A0A087H4K7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H4K7 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2576 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.1 | 1e-146 | bHLH family protein |
Publications ? help Back to Top | |||
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