PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK37014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | AP2 | ||||||||
Protein Properties | Length: 433aa MW: 47687.3 Da PI: 9.0717 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 70 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g KFK37014.1 70 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 129 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.6E-13 | 70 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-17 | 70 | 138 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-15 | 71 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 71 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-25 | 71 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-5 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-5 | 119 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MASVTSSDQG PKTEAGCSGG GGGGESSETV AASDQMLLYR GFKKAKKERG CTAKERISKM 60 PPCTAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQVYLGAY DDEEAAARAY 120 DLAALKYWGP GTLINFPVTD YTRDLEEMQN LSREEYLASL RRYPFGRKSS GFSRGIAKYR 180 GLQSRWDASA SRMPGPDYFS SIHYGAGDDR GAEGDFLGSF CLERKIDLTG YIKWWGNNKP 240 RQPESSSKAS EDAKVEDAGT ELKTLEHISQ ATEPYKVPNL GVFRGTQRKE KQILSPSSAS 300 SALSILSQSP AFKSLEEKVL KIQESSNREN DENANRNIIN MEKSHGKEIE KPVVSHGVAL 360 GGGGVAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPYLPPGS SHPSEVTKTE 420 TSCSTYSYLP QEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK37014.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118789 | 0.0 | AK118789.1 Arabidopsis thaliana At2g41710 mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL21-12-C12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884199.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Swissprot | Q8GWK2 | 0.0 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A087H4G2 | 0.0 | A0A087H4G2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H4G2 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10815 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.2 | 0.0 | AP2 family protein |