PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37013.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family AP2
Protein Properties Length: 428aa    MW: 47066.6 Da    PI: 8.9378
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37013.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1770129155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  KFK37013.1  70 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 129
                 57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-1770138IPR016177DNA-binding domain
PfamPF008476.5E-1370129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1571138IPR001471AP2/ERF domain
PROSITE profilePS5103220.12671137IPR001471AP2/ERF domain
SMARTSM003801.9E-2571143IPR001471AP2/ERF domain
PRINTSPR003674.3E-57283IPR001471AP2/ERF domain
PRINTSPR003674.3E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MASVTSSDQG PKTEAGCSGG GGGGESSETV AASDQMLLYR GFKKAKKERG CTAKERISKM  60
PPCTAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQVYLGAY DDEEAAARAY  120
DLAALKYWGP GTLINFPVTD YTRDLEEMQN LSREEYLASL RRKSSGFSRG IAKYRGLQSR  180
WDASASRMPG PDYFSSIHYG AGDDRGAEGD FLGSFCLERK IDLTGYIKWW GNNKPRQPES  240
SSKASEDAKV EDAGTELKTL EHISQATEPY KVPNLGVFRG TQRKEKQILS PSSASSALSI  300
LSQSPAFKSL EEKVLKIQES SNRENDENAN RNIINMEKSH GKEIEKPVVS HGVALGGGGV  360
AAALSLQKSM YPLTSLLTAP LLTNYNTLDP LADPILWTPY LPPGSSHPSE VTKTETSCST  420
YSYLPQEK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881180.0AY088118.1 Arabidopsis thaliana clone 41462 mRNA, complete sequence.
GenBankBT0259850.0BT025985.1 Arabidopsis thaliana At2g41710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884200.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A087H4G10.0A0A087H4G1_ARAAL; Uncharacterized protein
STRINGA0A087H4G20.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein