PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36676.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 257aa    MW: 28527.8 Da    PI: 6.2817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36676.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-1365111354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+h  +E+rRRdriNs ++ Lr+l+P++      Kl+Ka+ L  ++e +k+L
  KFK36676.1  65 RSHRLAEKRRRDRINSHLSALRKLVPNS-----DKLDKAALLATVIEQVKEL 111
                 68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-1461118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.29462111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1065111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-1365114No hitNo description
Gene3DG3DSA:4.10.280.102.5E-1466118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1168117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.818155231IPR002912ACT domain
Gene3DG3DSA:3.30.70.2603.9E-5157221No hitNo description
CDDcd048730.00211157225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MENSYDSATA MWTDSTTPPY MVSWSDSTGS DWTRFNLGLA SSSSGNFPAD DEFVGGIEKA  60
ESVSRSHRLA EKRRRDRINS HLSALRKLVP NSDKLDKAAL LATVIEQVKE LKQKATESQF  120
FQDLPSESDG VTVQPETISN DYESDNNNGV FVMFKASFCC EDQPEAISEI IRVLTKLQLE  180
TIQAEIICVG GRLRINFILK DSNCNDTTNI AASAKALKQS LCAALNRITS SSSSSTSSVC  240
RIRSKRQRWF LSSHYSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36676.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181549.11e-140basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9XEF01e-141BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A087H3H40.0A0A087H3H4_ARAAL; Uncharacterized protein
STRINGA0A087H3H40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-142bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]