PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK36372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 851aa MW: 93043.5 Da PI: 6.3813 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.4e-18 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++p+ +r++L +++ +++ +q+kvWFqNrR +ek+ KFK36372.1 20 KYVRYTPEQVEALERVYTECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5678*****************************************************97 PP | |||||||
2 | START | 190 | 1.1e-59 | 169 | 377 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aeea++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W +++++++tl vi g g+++l+++++ KFK36372.1 169 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPM-KVAEILKDRPSWLRDCRSVDTLSVIPAGngGTIELIYTQM 266 799*******************************************************.8888888888*****************999********** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+p Rdf+++Ry+ +l++g++v++++S++s + p+ sss+vRae++pSg+li+p+++g+s +++v+hvdl++ ++++++r+l++s+ + ++ KFK36372.1 267 YAPTTLAPaRDFWTLRYSTCLEDGSYVVCERSLTSATGGPTgppSSSFVRAEMRPSGFLIRPCDGGGSILHIVDHVDLDACSVPEVMRPLYESSKILAQ 365 *************************************9999999******************************************************* PP HHHHHHTXXXXX CS START 194 ktwvatlqrqce 205 kt++a+l++ ++ KFK36372.1 366 KTTLAALRHVRQ 377 *******98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.305 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.1E-15 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-16 | 19 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.02E-16 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-18 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 5.48E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 26.196 | 159 | 360 | IPR002913 | START domain |
CDD | cd08875 | 7.80E-78 | 163 | 379 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 5.5E-21 | 167 | 353 | IPR023393 | START-like domain |
SMART | SM00234 | 6.6E-63 | 168 | 378 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.03E-35 | 168 | 380 | No hit | No description |
Pfam | PF01852 | 4.5E-57 | 169 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 2.1E-46 | 705 | 850 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MMMVHTMNRE SPDKGLDSGK YVRYTPEQVE ALERVYTECP KPTSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EAARLQTVNR KLNAMNKLLM EENDRLQKQV SHLVYENGHM 120 KHKIHTASGT TTDNSCESVV VSGQQHQQQN PNPQHLQRDA NNPAGLLSIA EEALAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAISRNC SGIAARACGL VSLEPMKVAE ILKDRPSWLR 240 DCRSVDTLSV IPAGNGGTIE LIYTQMYAPT TLAPARDFWT LRYSTCLEDG SYVVCERSLT 300 SATGGPTGPP SSSFVRAEMR PSGFLIRPCD GGGSILHIVD HVDLDACSVP EVMRPLYESS 360 KILAQKTTLA ALRHVRQIAQ ETNGEGQYGG GQKPAVLRTF SQRLCRGFND AVNGFADDGW 420 TPMGSDGAED VTITINLSPG KFGGSQYGNS FLPSFGSGVL CAKASMLLQN VPPAVLVRFL 480 REHRSEWADY GVDAYAAASL RASPFAVPCA RAGGFPSNQV IIPLAQRVEH EEFPEVVRLE 540 GHAYSPEDMG LARAMYLLQL CSGADENVVG GCAQLVFAPI DESFADDSSI GAPLLPSGFS 600 VIPLEHKSTP NDASANRTLD LASSLEGSTR QAGEADPNGC NFRSVVTIAF QFTFDNHSRD 660 NVALMARQYV RRIVGSIQRV ALAIAPRPGS NISPISVPTS PEALTLVRWI SRSYRVHTGA 720 DLFGSDSQTS GDTMLHQLWN HTDAILCCSL KTNGSPAFIF ANQTGLDMLE TTLLALQDIM 780 LDKTLDESGY KALCSEFPRI MQQGYAHLPA GVCASSMGRL VSYEQATAWK VLEDDESNYC 840 LAFMFVNWSF V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK36372.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441291 | 0.0 | AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene). | |||
GenBank | AY099791 | 0.0 | AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. | |||
GenBank | BT000335 | 0.0 | BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504942.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A087H2M0 | 0.0 | A0A087H2M0_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H2M0 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4256 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |