PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36253.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 289aa    MW: 31606.8 Da    PI: 7.1661
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36253.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-333690155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprlrWt+eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  KFK36253.1 36 KPRLRWTTELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 90
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-323390IPR009057Homeodomain-like
PROSITE profilePS5129411.1093393IPR017930Myb domain
SuperFamilySSF466891.13E-163590IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-243691IPR006447Myb domain, plants
PfamPF002491.1E-73888IPR001005SANT/Myb domain
PfamPF143797.1E-23134183IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MYSAIRSLPV DGSMGEYSDG TNLPIEACLV LTTDPKPRLR WTTELHDRFV DAVTQLGGPD  60
KATPKTIMRT MGVKGLTLYH LKSHLQKFRL GRLPCKESTD NSKDVSSVAE SQDTGSSTTS  120
SLRLAAQEQK ESYQVTEALR AQMEVQRRLH EQLEYTQVQQ RLQLRIEAQG KYLQTILEKA  180
CKAIEEQAVA FAGLEAAREE LSELAIKVSN GCQSTFDTTK MTIPSLSELA VAIEHKNNCS  240
AESSLTSSTV GSPVSAAMMK KRHRGVFGNG DSVVVGHEAG WVMPSSSIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36253.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532350.0AK353235.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-H18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001031626.10.0Homeodomain-like superfamily protein
RefseqXP_006284218.10.0protein PHR1-LIKE 3 isoform X1
RefseqXP_006414870.10.0protein PHR1-LIKE 3 isoform X1
SwissprotQ8LAJ70.0PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A087H2A10.0A0A087H2A1_ARAAL; Uncharacterized protein
STRINGA0A087H2A10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]