PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK36171.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 452aa MW: 49587.2 Da PI: 6.858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK36171.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.5e-05	333	371	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq KFK36171.1 333 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 371 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	321	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.83E-5	331	375	No hit	No description
SuperFamily	SSF47459	8.37E-11	331	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-8	335	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLENNSD PSCYGASSAH QWSPGGISLN SVSLSHNYNN 60 EILNTRDHNN NKTSECMSLS NIHHHSLIQQ QDFPLQWSHH DQSSYHHHEG LLKIKEELSS 120 STTSDHQQDM PKFTDMLNSP VITNYLKINE HKDYTEKLLL KTISSGFPIN GDYCNSLPSS 180 STSSSSPSSQ SHRGSFSQIY PSVNISSLNE SRRMSMEMSN IPRPFDMNMQ VLDGRLFEGN 240 VLVPPLNSQE ISNLGMSRGS FAPPFGLPFH HHLQQTLHQP SSSPTHQMAM FSNEAEASEA 300 KRRNFLMATK ASENASKKPR VESRSSCPPF KVRKEKLGDR IAALQQLVSP FGKTDTASVL 360 MEAIGYIKFL QSQIETLSVP YMRAARNRPG KASQLGSLPQ EGDEEEMRDL RSRGLCLVPL 420 SCMTYVTGDG GDGGGGVGGG FWPGPPGFGG GT

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MDSANLHQLQ DQLQLVGSSS SSSSLENNSD PSCYGASSAH QWSPGGISLN SVSLSHNYNN  60
EILNTRDHNN NKTSECMSLS NIHHHSLIQQ QDFPLQWSHH DQSSYHHHEG LLKIKEELSS  120
STTSDHQQDM PKFTDMLNSP VITNYLKINE HKDYTEKLLL KTISSGFPIN GDYCNSLPSS  180
STSSSSPSSQ SHRGSFSQIY PSVNISSLNE SRRMSMEMSN IPRPFDMNMQ VLDGRLFEGN  240
VLVPPLNSQE ISNLGMSRGS FAPPFGLPFH HHLQQTLHQP SSSPTHQMAM FSNEAEASEA  300
KRRNFLMATK ASENASKKPR VESRSSCPPF KVRKEKLGDR IAALQQLVSP FGKTDTASVL  360
MEAIGYIKFL QSQIETLSVP YMRAARNRPG KASQLGSLPQ EGDEEEMRDL RSRGLCLVPL  420
SCMTYVTGDG GDGGGGVGGG FWPGPPGFGG GT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK36171.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012375	0.0	AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010478109.1	0.0	PREDICTED: transcription factor bHLH110 isoform X1
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A087H219	0.0	A0A087H219_ARAAL; Uncharacterized protein
STRING	A0A087H219	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]