PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36040.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 330aa    MW: 38925.6 Da    PI: 7.5668
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36040.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61e-072667338
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                +r C+++ +k++ ++C +++ +lC+ C ++ H+       H+
  KFK36040.1 26 PRACELCVNKHAVWYCASDDAFLCHVCDESVHSAnhvatkHE 67
                578*****************************6575556665 PP
2CCT67.44e-23282325144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++ RY++Krk+R+FeKkirYe+RK++A++RpR+KGrFv+++
  KFK36040.1 282 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 325
                 9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-82471IPR000315B-box-type zinc finger
PROSITE profilePS501199.672471IPR000315B-box-type zinc finger
PfamPF006431.4E-62668IPR000315B-box-type zinc finger
CDDcd000217.61E-102771No hitNo description
PfamPF062031.0E-17282324IPR010402CCT domain
PROSITE profilePS5101715.944282324IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTSHQNIQFH KNTMILEHQE DVKPPPRACE LCVNKHAVWY CASDDAFLCH VCDESVHSAN  60
HVATKHERVC LRTNEISNDV LRGTSSKPVW HSGFRRKTRT PRVHNEKRRR REEPRVPEIG  120
GEGMFFMPEK HDDGNDDDLT SLVPEFQGFT EMGFFLSNQD GTEETTREFN FEDEIDAMEY  180
LYYTEAGEAI PYSEETCPEP SLLRCKKDYN NVTALTTKTE EDYESNNAKQ RNMLLRLNYE  240
NVMAAWDKQE SPRNQTKFTN TSNFQLVPHG IMEKDVSRKS DREARVWRYR DKRKNRLFEK  300
KIRYEVRKVN ADKRPRMKGR FVRRSLTIDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194110RRKTRTPRVHNEKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393308.11e-172zinc finger protein CONSTANS-LIKE 8
SwissprotQ9M9B31e-158COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLA0A087H1N80.0A0A087H1N8_ARAAL; Uncharacterized protein
STRINGA0A087H1N80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.11e-152B-box type zinc finger protein with CCT domain