PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36001.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 306aa    MW: 34671.1 Da    PI: 6.523
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36001.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-32170225156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
  KFK36001.1 170 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 225
                 79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.451167227IPR017930Myb domain
SuperFamilySSF466896.09E-18168228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-28169228IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-26170225IPR006447Myb domain, plants
PfamPF002492.7E-9172223IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGSLGDELSL GSGFQVSKMM NVAEHIKKLE EEKRKIQDHH KLELPLCLEI LNNAISCLKE  60
ENKKCLVNDD TKPLLKDFIS LDKTIGEEDD EVIKEKKFQQ WKANDHILNQ RFLERNEEKS  120
SMLLIPTPKV ETGLGLGLAS SSIRRKDIAS SSFTSMAQPP AFLQQQALRK QRRCWTPELH  180
RRFVDALQQL GGPGVATPKQ IREHMQEEGL TNDEVKSHLQ KYRLHIRRPN NSNPEKQSVV  240
VLGFKLWNSS QEEEGESSSK RSDSQSDSPQ GPLQLPLSTT TTTTGGDSSM EDGEYTKSES  300
FKIERD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393245.11e-123transcription factor HHO6
SwissprotQ9FX841e-119HHO6_ARATH; Transcription factor HHO6
TrEMBLA0A087H1J90.0A0A087H1J9_ARAAL; Uncharacterized protein
STRINGA0A087H1J90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.16e-84G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]