PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35918.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 195aa    MW: 21830.5 Da    PI: 10.2057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35918.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-202373155
         AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++++GVr ++ +gr++AeIrd ++    + r++lg+f++a eAaka++ a+++l+g
  KFK35918.1 23 TRFRGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDSAIEAAKAYDSAARNLRG 73
                589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-122373IPR001471AP2/ERF domain
CDDcd000181.17E-292383No hitNo description
SuperFamilySSF541717.19E-212483IPR016177DNA-binding domain
SMARTSM003801.0E-322487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-302482IPR001471AP2/ERF domain
PROSITE profilePS5103222.262481IPR001471AP2/ERF domain
PRINTSPR003673.2E-92536IPR001471AP2/ERF domain
PRINTSPR003673.2E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRRGKLSSTA VAVPIPTGSI KETRFRGVRK RPWGRFAAEI RDPWKKSRVW LGTFDSAIEA  60
AKAYDSAARN LRGPKAKTNF PISISLPPPQ VDPFMDHRLS DRPTSSGMSS TVESFSRSRS  120
IITTTTKRYP RTPPIVPEDC HSDCDSSSSV IDDGDDDDDL ASSSSRRRRN IPFRFDLNFP  180
PLDLFNGSDD LDLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192185267ATERF1
3gcc_A2e-192185267ATERF1
5wx9_A3e-1921861177Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35918.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0081053e-42AB008105.1 Arabidopsis thaliana AtERF-3 mRNA for ethylene responsive element binding factor 3, complete cds.
GenBankAB4935043e-42AB493504.1 Arabidopsis thaliana At1g50640 mRNA for hypothetical protein, partial cds, clone: RAAt1g50640.
GenBankAC0125613e-42AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAC0792793e-42AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankBT0252953e-42BT025295.1 Arabidopsis thaliana At1g50640 mRNA, complete cds.
GenBankCP0026843e-42CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869093.13e-74ethylene-responsive transcription factor 3
SwissprotO803398e-64ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A087H1B61e-136A0A087H1B6_ARAAL; Uncharacterized protein
STRINGA0A087H1B61e-137(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.12e-41ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]