PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35915.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family RAV
Protein Properties Length: 590aa    MW: 68494.8 Da    PI: 8.7293
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35915.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.3e-093682254
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                ++kGV  + k+g W A+I+       ++r++lg+f t  +Aa a++ a  kl+
  KFK35915.1 36 KFKGVV-HQKNGNWGAQIYTE-----QRRYWLGTFKTVADAAFAYDSASIKLR 82
                89***7.7779******9995.....6*********************99987 PP
2B380.32e-25166267190
                 EEEE-..-HHHHTT-EE--HHH.HTT...............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                 f k ltpsdv+k++rlv+ kk+a ++               +        +++++++d++ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D+vv
  KFK35915.1 166 FRKDLTPSDVGKLNRLVIHKKHAVTYlpfindyqkereegeK---GgdvDDVEVVFYDRDLRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDVVV 261
                 8899***************************98877776662...1444899*********************************************** PP

                 EEE-SSSEE CS
          B3  82 Fkldgrsef 90 
                 F+   + ef
  KFK35915.1 262 FS---TCEF 267
                 *9...4445 PP
3B383.51.9e-26413511184
                 EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                 f+k+ltpsdv+k++rlv+pkk a ++                g     +++++++d+  ++W+++++y+++s+++v+t+GW++Fvk+++Lke+D+v F+
  KFK35915.1 413 FEKKLTPSDVGKLNRLVIPKKSAVKYlpfindyqkeredgekG-GDVDDVEVVFYDRALKQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKENDVVRFY 510
                 99*****************************888887766642.224899************************************************9 PP

                 E CS
          B3  84 l 84 
                  
  KFK35915.1 511 T 511
                 4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-123694IPR016177DNA-binding domain
SMARTSM003802.1E-103699IPR001471AP2/ERF domain
PROSITE profilePS5103216.1863693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-133693IPR001471AP2/ERF domain
CDDcd000186.72E-153695No hitNo description
Gene3DG3DSA:2.40.330.102.3E-28162264IPR015300DNA-binding pseudobarrel domain
CDDcd100172.95E-19165262No hitNo description
SuperFamilySSF1019367.59E-24165264IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-13166280IPR003340B3 DNA binding domain
PfamPF023623.0E-22166267IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715166290IPR003340B3 DNA binding domain
PROSITE profilePS5103210.494227341IPR001471AP2/ERF domain
SMARTSM003801.4E-4291347IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-7292342IPR016177DNA-binding domain
CDDcd000181.22E-10299343No hitNo description
Gene3DG3DSA:3.30.730.101.6E-9303341IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.8E-30409512IPR015300DNA-binding pseudobarrel domain
CDDcd100176.64E-22412510No hitNo description
SuperFamilySSF1019363.01E-25412512IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.787413526IPR003340B3 DNA binding domain
SMARTSM010191.7E-19413524IPR003340B3 DNA binding domain
PfamPF023622.2E-23413512IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MNATAETSNS SNDSSLPHKK RKRPLDDAPD NNALVKFKGV VHQKNGNWGA QIYTEQRRYW  60
LGTFKTVADA AFAYDSASIK LRDFDANSPR NFPWNDLTVH EPAFQAGHTR DEVLNMIKDG  120
SYQHKLREHI RARSHQKVPS DNNIARSKQS QGDKKSDKCF ACKELFRKDL TPSDVGKLNR  180
LVIHKKHAVT YLPFINDYQK EREEGEKGGD VDDVEVVFYD RDLRQWKFRY CYWRSSQSFV  240
FTRGWNGFVK EKNLKEKDVV VFSTCEFPSN VETLEGQSKS FLMIDVRCFS ENGFVAHEEI  300
YVEHQRIWLG TFKSAADAAK AYDSTSIKVR GFDPNGHRNF PWDDFTVHEP AFQATKTRDE  360
VLNMIKDGSY QHKFIEHLRN QSHKGASNNN VVGSKQREEG KESEKCFACK ELFEKKLTPS  420
DVGKLNRLVI PKKSAVKYLP FINDYQKERE DGEKGGDVDD VEVVFYDRAL KQWKFRYCYW  480
RSSQSFVFTR GWNGFVKEKN LKENDVVRFY TCEVPSNVEI SEGQSKKFLM IDVHCFSENG  540
FVAHEEVNKT VHNHNSFEKT ENLFNSKLKV EETKSEEKKG GFMLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2316250910101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894269.21e-138AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-136RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A087H1B30.0A0A087H1B3_ARAAL; Uncharacterized protein
STRINGA0A087H1B30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-120RAV family protein