PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35883.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 230aa    MW: 26008.5 Da    PI: 6.9276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35883.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-1075120553
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                 +   E++RRdr+N++f eL  ++ +    + +K +K++iL  A++ +++
  KFK35883.1  75 KACKEKQRRDRLNDKFTELSNVMEPG---RPPKTDKVAILNDAIRMVNQ 120
                 5678*********************8...89*************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.80170121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-874120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1275140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-776127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1277143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-779126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVSPENTNWL SDYPLIDGAF SDQNHTFPWQ IDHHIDGSAS VSVEVDGFLC DSDVIKEPGS  60
RKRLKSEACG GSNSKACKEK QRRDRLNDKF TELSNVMEPG RPPKTDKVAI LNDAIRMVNQ  120
AREEAQKLKD LNSSLQEKIK ELKDEKNELR DEKQKLKIEK ERIEQQLKAI KPQPQPCFLP  180
TPQTLTQAQA QAPGSKLVPF TTYPGFAMWQ FMPPATIDTS QDHVLRPPVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35883.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175518.11e-147basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9C6821e-148BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A087H1811e-170A0A087H181_ARAAL; Uncharacterized protein
STRINGA0A087H1811e-171(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-140bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]