PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35878.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family RAV
Protein Properties Length: 336aa    MW: 38614.5 Da    PI: 7.9015
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35878.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.83.5e-104290155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++kGV +   +g W A+I+       ++r++lg+f ta +Aaka++ a  kl++
  KFK35878.1 42 PKFKGVVQQQ-NGHWGAQIYAE-----HQRIWLGTFKTAGDAAKAYDSASIKLRN 90
                79****9888.8*********5.....5*********************999986 PP
2B391.85e-29173279195
                 EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                 f+k+ltpsdv+k++rlv+pkk+a ++                g    ++++++++d+s r+W+++++y+++s+++v+t+GW++Fvk++ Lke+D++vF+
  KFK35878.1 173 FQKELTPSDVGKLNRLVIPKKYAVKYlpfineneteredgekG-GDVKDVEVVFYDRSMRQWKFRYCYWRSSQSFVFTRGWNSFVKEKSLKEKDIIVFY 270
                 99****************************9888887776642.23499*************************************************9 PP

                 E-SSSEE..EEE CS
          B3  84 ldgrsefelvvk 95 
                    + +   +vk
  KFK35878.1 271 ---NCDVPSNVK 279
                 ...344444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.85E-2242102No hitNo description
PfamPF008477.7E-54290IPR001471AP2/ERF domain
PROSITE profilePS5103216.88443100IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1343101IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-1643100IPR001471AP2/ERF domain
SMARTSM003803.1E-1843106IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-32170271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-27172271IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-26172270No hitNo description
SMARTSM010191.5E-21173284IPR003340B3 DNA binding domain
PfamPF023623.6E-26173280IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52173286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDNIEKTETS LGSSDSVLRL TVKPGDVTTT KPTLSNTSTS TPKFKGVVQQ QNGHWGAQIY  60
AEHQRIWLGT FKTAGDAAKA YDSASIKLRN VDANSHRNFP WDDYTVHEPA FQETIPRDTV  120
LNMIRDGSYP HKFREHLQSQ VVRNRNCVGS KQVQGGGRGG QELNQCFACR ELFQKELTPS  180
DVGKLNRLVI PKKYAVKYLP FINENETERE DGEKGGDVKD VEVVFYDRSM RQWKFRYCYW  240
RSSQSFVFTR GWNSFVKEKS LKEKDIIVFY NCDVPSNVKI SEGQSKTFLM IDVIEEANKM  300
VHDSSDEEIN FMPKFEVEEP KSEEKKGFML FGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2516926910100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35878.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175524.11e-165AP2/B3 transcription factor family protein
SwissprotQ9C6881e-166RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A087H1760.0A0A087H176_ARAAL; Uncharacterized protein
STRINGA0A087H1760.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-148RAV family protein