PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35741.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 198aa    MW: 21451.9 Da    PI: 10.0481
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35741.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-203180255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+t+++Aa+a++aa+++++g
  KFK35741.1 31 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTPQQAARAYDAAAREFRG 80
                59*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.9993188IPR001471AP2/ERF domain
PfamPF008473.3E-143180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-323189IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-223189IPR016177DNA-binding domain
SMARTSM003801.4E-363194IPR001471AP2/ERF domain
CDDcd000183.17E-213190No hitNo description
PRINTSPR003671.1E-103243IPR001471AP2/ERF domain
PRINTSPR003671.1E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPKTGLKPDP VTPNPVQNQN QNQNNNVKEI RYRGVRKRPW GRYAAEIRDP GKKTRVWLGT  60
FDTPQQAARA YDAAAREFRG SKAKTNFPAT VVVDGGGGFV RSPSQSSTVD SVSPTSVRVV  120
TPQELELSLG SGGGGNGGAC YRIPVARPVY YYNVTTVTAR KCGVQSESSS SSVVDYENGS  180
EKKYEPLDLD LNLAPPTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-203291363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-203291666ATERF1
3gcc_A5e-203291666ATERF1
5wx9_A8e-2031881472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35741.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305665.14e-79ethylene-responsive transcription factor 8
SwissprotQ9MAI52e-64ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLA0A087H0T91e-142A0A087H0T9_ARAAL; Uncharacterized protein
STRINGA0A087H0T91e-142(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.11e-39ethylene response factor 8
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]