PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35712.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TCP
Protein Properties Length: 295aa    MW: 32908.3 Da    PI: 8.4473
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35712.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.37e-3520107283
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceaessss 80 
                 + kkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+q++k +i+ l ++                    s              
  KFK35712.1  20 TSKKDRHSKVCTAKGPRDRRVRLSASTAIQFYDVQDRLGFDRPSKAVDWLIQNSKSSIDNLQKLppfnpiythsasiskprrskS-------------- 104
                 689*************************************************************777766544332222211111.............. PP

         TCP  81 sas 83 
                   s
  KFK35712.1 105 LIS 107
                 111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3320129IPR005333Transcription factor, TCP
PROSITE profilePS5136932.5532280IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSNHESEIVE VEGGHIIKST SKKDRHSKVC TAKGPRDRRV RLSASTAIQF YDVQDRLGFD  60
RPSKAVDWLI QNSKSSIDNL QKLPPFNPIY THSASISKPR RSKSLISSSP VTGETEHRRS  120
FVPASMDSDT VKSFFPVVST ELTPPQNQPY QRQDLRLSLQ SLANETEQPT LFSSQSNFDW  180
DQPSPELGRI QRLVTWNNDG GGFVFDSPGT TNTTSYESVY GQSQVFSQRG SLQSINTTPM  240
IRAWFDQPYN VPSEIHQSAI PGIAFASNGE FAGFRIPGRF QDDNKPSSAS SDSRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-202780154Putative transcription factor PCF6
5zkt_B3e-202780154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35712.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392814.11e-118transcription factor TCP3
RefseqXP_006392815.11e-118transcription factor TCP3
SwissprotQ9MAH81e-107TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A087H0R00.0A0A087H0R0_ARAAL; Uncharacterized protein
STRINGA0A087H0R00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-103TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]