PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35436.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARR-B
Protein Properties Length: 428aa    MW: 48583.5 Da    PI: 5.3017
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35436.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like651.4e-20215274156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm....kvkgLtlehvkSHLQkYRla 56 
                 k r+ Wtp+LH++F  av +L   +k  Pk+il++m    +v+gLt+++v+SHLQkYR +
  KFK35436.1 215 KRRMSWTPDLHHKFEVAVGKLSSLDKVFPKSILKCMqeelNVEGLTRNNVASHLQKYRQH 274
                 68********************************995555699***************86 PP
2Response_reg70.57.1e-24401441105
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd +p+ + l+++++ +  y +v+  ++ge+al+ l +++  +Dl++ D  mp+++Gle+lk+i +e  +lp++++++  +++++++   +Ga 
    KFK35436.1  40 VLLVDADPNSLTLMKNLMAQFSY-RVTYYENGEDALAFLTKNKhvIDLVIWDYHMPKINGLEALKTISKEM-DLPVVIMSRDHKKDTVKKSTLYGAC 134
                   89*********************.***************776668**********************8865.8********99************** PP

                   EEEESS--HH CS
  Response_reg  96 dflsKpfdpe 105
                   dfl+Kp+++e
    KFK35436.1 135 DFLVKPVSKE 144
                   ******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.4E-3136161No hitNo description
SuperFamilySSF521722.56E-2936160IPR011006CheY-like superfamily
SMARTSM004482.7E-2038149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.739154IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2040144IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.39E-2041149No hitNo description
Gene3DG3DSA:1.10.10.601.4E-21212277IPR009057Homeodomain-like
SuperFamilySSF466899.85E-14213277IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17215274IPR006447Myb domain, plants
PfamPF002492.5E-6217272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSLPSNILKE REAETCYNEI ESLMDHDDDE DFPTTSGIRV LLVDADPNSL TLMKNLMAQF  60
SYRVTYYENG EDALAFLTKN KHVIDLVIWD YHMPKINGLE ALKTISKEMD LPVVIMSRDH  120
KKDTVKKSTL YGACDFLVKP VSKEVVAVLW RHVFNKTMLS KSGLGKSVGS DSGGLLGQDN  180
DDLYQNDEAE GSKNVEDSVE QNTLEQIGDK SSSKKRRMSW TPDLHHKFEV AVGKLSSLDK  240
VFPKSILKCM QEELNVEGLT RNNVASHLQK YRQHAEKKSN APQKTLEDAD WRNAPLVTSK  300
PLLNSNINLQ TGLRYFVNDQ TAANAPIQYP TSGPIQYPLS NYLTMNNNHF MTNPLANNAP  360
YTDPFYQPEQ QQQYYPSLQF PSVISKQDHG NLSSAMENMD LISYPDSSYD QHESFLPGYN  420
NFDQNPRF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638977.11e-142putative two-component response regulator ARR20
SwissprotQ9LZJ81e-113ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLA0A087GZY40.0A0A087GZY4_ARAAL; Uncharacterized protein
STRINGA0A087GZY40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.12e-86response regulator 20