PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35381.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 337aa    MW: 38628.4 Da    PI: 7.2743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35381.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13160210154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +r +h ++Er+RR+ +N+ ++ Lr+llP+    + ++ + a+i+  A++Y+k L
  KFK35381.1 160 QRINHIAVERNRRRTMNEYINSLRSLLPPT---YIQRGDQASIVGGAINYVKVL 210
                 699**************************9...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.41E-10158215No hitNo description
SuperFamilySSF474596.67E-17158228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.313159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13161223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MERFQGHINP YFFDRNADVR SLEVEGFAEE ESLQESIPFL KMLQSEEEPN FLALLSLQTL  60
KEPWELESYL SRNDPYSPVQ SETNRFYHNP ISASSMEGTN QELFSFSQAN MTIPSSSSAS  120
LLPHTTNTRR KRKISNLKPQ EKRKRRKTKP SKNIEEIENQ RINHIAVERN RRRTMNEYIN  180
SLRSLLPPTY IQRGDQASIV GGAINYVKVL EQIIQSLEAQ KRQSIGEETN NHPLSGISSN  240
NLWTTQENQT SIPKIEATMI QNHVNLKIQC PKKQGQLLKG IISLEKLGLT VLHLNIASSS  300
NAYVSYSFNL KMEDDCDLGN SDEITAAVHR IFDRDQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130146KRKISNLKPQEKRKRRK
2141146KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886002e-87AF488600.1 Arabidopsis thaliana clone bHLH067 putative bHLH transcription factor mRNA, partial sequence.
GenBankAJ6304812e-87AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBankAK1185272e-87AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBankAY0887412e-87AY088741.1 Arabidopsis thaliana clone 93825 mRNA, complete sequence.
GenBankBT0052982e-87BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880824.11e-161transcription factor bHLH67
SwissprotQ700E41e-152BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A087GZS90.0A0A087GZS9_ARAAL; Uncharacterized protein
STRINGA0A087GZS90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-154bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]